View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_low_100 (Length: 209)
Name: NF14435_low_100
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_low_100 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 4e-80; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 2 - 168
Target Start/End: Complemental strand, 41829260 - 41829094
Alignment:
| Q |
2 |
catcagcattatgcctgtagtaaaagtgtaataaataacaatgtaacaacaccatatatataatcactcaaattcataatgaagagaaataaaaagggaa |
101 |
Q |
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| T |
41829260 |
catcaacattatgcctgtagtaaaagtgtaataaataacaatgtaacaacaccatatatataatcaatcaaattcataatgaagaaaaataaaaatggaa |
41829161 |
T |
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| Q |
102 |
aagtgttgattactgacttctttgcagaagtccaaatcccaacttcaaatctttctaagcagaattt |
168 |
Q |
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| T |
41829160 |
aagtgttgattactgacttctttgcagaagtccaaatcccaacttcaaatctttctaagcagaattt |
41829094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 41885460 - 41885618
Alignment:
| Q |
10 |
ttatgcctgtagtaaaagtgtaataaataacaatgtaacaacaccatatatataatcactcaaattcataatgaagagaaataaaaagggaaaagtgttg |
109 |
Q |
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| T |
41885460 |
ttatgcctctagtaaaagtgtaataaataacaatgtaacaacaccatatatataatcaatcaaattcataatgaagaaaaataaaaatggaaaagtgttg |
41885559 |
T |
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| Q |
110 |
attactgacttctttgcagaagtccaaatcccaacttcaaatctttctaagcagaattt |
168 |
Q |
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| T |
41885560 |
attactgacttctttgcagaagtccaaatcccaacttcaaatctttctaagcagaattt |
41885618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 168
Target Start/End: Complemental strand, 34453946 - 34453777
Alignment:
| Q |
15 |
cctgtagtaaaagtgtaataaa-----taacaatgtaacaa--caccatatatataatcactcaaattcataatgaagagaaataaaaagggaaaagtg- |
106 |
Q |
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| T |
34453946 |
cctgtagtaaaagtgtagtaaaagtgttaacaatgtaacaaaacaccatatatataatcaatcaaattcataaagaagaaaattaaaaagggaaaagtga |
34453847 |
T |
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| Q |
107 |
--------ttgattactgacttctttgcagaagtccaaatcccaacttcaaatctttctaagcagaattt |
168 |
Q |
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| T |
34453846 |
gaataatgttaattactcacttctttgcacaagtccaaatcccaacttcaaatctttctaagcagaattt |
34453777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 41896543 - 41896600
Alignment:
| Q |
111 |
ttactgacttctttgcagaagtccaaatcccaacttcaaatctttctaagcagaattt |
168 |
Q |
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| T |
41896543 |
ttactgactccattgcagaagaccaaacccccacttcaaatctttctaagcagaattt |
41896600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 35034950 - 35034903
Alignment:
| Q |
162 |
agaatttgaggctgtcaaatgggctttgctcaataggaatatcgtcct |
209 |
Q |
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| T |
35034950 |
agaatttgaggctgtcaaatggattttgctcaataggaatatcgtcct |
35034903 |
T |
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