View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_low_11 (Length: 595)
Name: NF14435_low_11
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 540; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 1 - 568
Target Start/End: Original strand, 31071706 - 31072273
Alignment:
| Q |
1 |
aaatatgtatgatatacaagagttattcaaaatcaaggaaaaaatgatgtaaaacctccgaatcagaaaatgaatggcatagaaaacagaagataaaaca |
100 |
Q |
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| T |
31071706 |
aaatatgtatgatatacaagagttattcaaaatcaaggaaaaaatgatgtaaaacctccgaatcagaaaatgaatggcatagaaaacagaagataaaaca |
31071805 |
T |
|
| Q |
101 |
aaattgaactccttgccacatattaataatctgcagcaggttggaaaatttcacatcaatcccaatacccgttcatactagcagctgattacattacatg |
200 |
Q |
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| T |
31071806 |
aaattgaactccttgccacatattaataatctgcagcaggttggaaaatttcacatcaatcccaatacccgttcatactagcagctgattacattacatg |
31071905 |
T |
|
| Q |
201 |
cttgaagttagtagtaaataaaatattactagctgttaatttaatggtgtattacacttcctcgcctaaatcttgaaaagagatcctactaatgtgaagt |
300 |
Q |
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| T |
31071906 |
cttgaaattagtagtaaataaaatattactagctgttaatttaatggtgtattacacttcctcgcctatatcttgaaaagagatcctactaatgtgaagt |
31072005 |
T |
|
| Q |
301 |
aatttgatcagaagataattaagtgtgaccaagaattgctcgcatcaataatcaaactcggattctcctgaacgattaattttagagagagttcattaac |
400 |
Q |
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| T |
31072006 |
aatttgatcagaagataattatgtctgaccaagaattgctcccatcaataatcaaactcggattctcctgaacgattaattttagagagagttcattaac |
31072105 |
T |
|
| Q |
401 |
cacttgagtccgatcacttgatttaaatatcatttcttgataaacacgagttctcaccaagactctaaatatgtgtatgagtttgcataatagtataatt |
500 |
Q |
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| T |
31072106 |
cacttgagtccaatcacttgatttaaatatcatttcttgataaacacgagttctcaccaagactctaaatatgtgtatgagtttgcataatagtataatt |
31072205 |
T |
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| Q |
501 |
tttctttcaaaaatacggatatgaagaaagtcctatagttcctactaagaccatactaattgtaatca |
568 |
Q |
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| T |
31072206 |
tttctttcaaaaatacggatatgaagaaagtcctatagttcctactaagatcatactaattgtaatca |
31072273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 31172454 - 31172518
Alignment:
| Q |
18 |
aagagttattcaaaatcaaggaaaaaatgatgtaaaacctccgaatcagaaaatgaatggcatag |
82 |
Q |
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| T |
31172454 |
aagagttattcaaaatcatgtaaaaaatgatggaaaaacttcgcatcagaaaatgaatggcatag |
31172518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 31172556 - 31172609
Alignment:
| Q |
180 |
agcagctgattacattacatgcttgaagttagtagtaaataaaatattactagc |
233 |
Q |
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| T |
31172556 |
agcagctgattacattacatgcttaaagttagtagtaaatgaaatgttattagc |
31172609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 31067439 - 31067520
Alignment:
| Q |
145 |
aaaatttcacatcaatcccaatacccgttcatactagcagctgattaca----ttacatgcttgaagttagtagtaaataaa |
222 |
Q |
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| T |
31067439 |
aaaatttcacatcagtaccaacaccctttcataccagcagctgattacataccttacattcttaaagttagtagtagataaa |
31067520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 448 - 484
Target Start/End: Original strand, 31172947 - 31172983
Alignment:
| Q |
448 |
gagttctcaccaagactctaaatatgtgtatgagttt |
484 |
Q |
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| T |
31172947 |
gagttctcaccgagactctaaatatgtgtatgagttt |
31172983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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