View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_low_13 (Length: 533)
Name: NF14435_low_13
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 38 - 517
Target Start/End: Complemental strand, 421379 - 420908
Alignment:
| Q |
38 |
atagttatagtgatagtgagagagagagtgtgtgtgataatagacttaatgtacacgccattacattacacactgttttctctgaatcaaatgaaatgag |
137 |
Q |
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||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
421379 |
atagttatagttatagtgagagagag--tgtgtgtgataatagacttaatgtacacgccattacattacacactgttttctctgaatcaaatgaaatgag |
421282 |
T |
|
| Q |
138 |
ttagatagatggatggatagataaagnnnnnnnnnnnncccaaccataacttttcagcaaattaggttagggctatcttattgctatttacacctccaaa |
237 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
421281 |
ttagatagatggatggatagataaagtctctctc----cccaaccataacttttcagcaaattaggttagggctatcttattgctatttacacctccaaa |
421186 |
T |
|
| Q |
238 |
aataaagaatgacttttatatattttacttataataatctcattcttcttgttgccacgtgattttaatttcatttcatttgacaggtacttattttttc |
337 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
421185 |
aataaagaatgacttttatatattttacttctaataatctcattcttcttgttacaacgtgattttaatttcatttcatttgacaggtactt--tttttc |
421088 |
T |
|
| Q |
338 |
tagagagacatgttggactatgaatggggtaacccatcaaacatcatgcttaccggaaatgaagacaactccggtgcagcagccaccgatcaagcccacc |
437 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
421087 |
tagagagacatgttggactatgaatggggtaacccatcaaacatcatgcttaccggaaatgaagacaactccggtgcagcagccaccgatcaagcccacc |
420988 |
T |
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| Q |
438 |
gtcaaatcttcgaccactatgcttctcaagctatgttatccgacaactaccttaacggacctggtggtggacccaccatc |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
420987 |
gtcaaatcttcgaccactatgcttctcaagctatgttatccgacaactaccttaacggacctggtggtggacccaccatc |
420908 |
T |
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