View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14435_low_15 (Length: 523)

Name: NF14435_low_15
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14435_low_15
NF14435_low_15
[»] chr2 (5 HSPs)
chr2 (326-514)||(14814906-14815094)
chr2 (24-362)||(14814563-14814886)
chr2 (176-248)||(16117871-16117943)
chr2 (174-248)||(11922036-11922110)
chr2 (188-258)||(26312553-26312623)
[»] chr3 (5 HSPs)
chr3 (201-246)||(55272864-55272909)
chr3 (202-246)||(3973245-3973289)
chr3 (202-246)||(3993815-3993859)
chr3 (202-246)||(3996587-3996631)
chr3 (202-246)||(4010126-4010170)
[»] chr1 (4 HSPs)
chr1 (175-243)||(38902061-38902129)
chr1 (207-246)||(46487071-46487110)
chr1 (202-248)||(11241464-11241510)
chr1 (202-246)||(23333854-23333898)
[»] chr4 (4 HSPs)
chr4 (207-246)||(29857109-29857148)
chr4 (206-261)||(37189062-37189117)
chr4 (174-246)||(10180571-10180643)
chr4 (186-246)||(22628563-22628623)
[»] chr5 (2 HSPs)
chr5 (175-237)||(11200498-11200560)
chr5 (203-248)||(18396505-18396550)
[»] chr8 (1 HSPs)
chr8 (206-246)||(29811520-29811560)
[»] chr6 (1 HSPs)
chr6 (215-267)||(1946974-1947025)


Alignment Details
Target: chr2 (Bit Score: 161; Significance: 1e-85; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 326 - 514
Target Start/End: Original strand, 14814906 - 14815094
Alignment:
Q  326 aaggatctattaatatctatgtgtcaccatatttccatattttaatatttgaatactaaaaagtgtgtttcatcttaatggtggtacataatagatactt 425  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14814906 aaggatctattaatatctatgtgtcaccatatttccaaattttaatatctgaatactaaaaagtgtgtttcatcttaatggtggtacctaatagatactt 14815005  T
Q  426 atttttatgagggtgttactcagtattgatgatggtctaagtgtcataatctctattttgcatcttgttactaacataggtagtctgtg 514  Q
    ||||||||||||||| ||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  14815006 atttttatgagggtgctactcagcatagatgatggtctaagtgtcatattctctattttgcatcttgttactaacataggtagtctgtg 14815094  T

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Target: chr2; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 24 - 362
Target Start/End: Original strand, 14814563 - 14814886
Alignment:
Q  24 ttgctctatttatagattgatgagtgtgtgtcaaataagcataaacagttgcaccactcacattgtaatgataaggcaactgtttgaacgattagggggc 123  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  14814563 ttgctctatttatagattgatgagtgtgtgtcaagtaagcataaacagttgcaccactcacatcgtaatgctaaggcaactgtttgaacgattagggggc 14814662  T
Q  124 atattgactctaacagcatccaaaatgnnnnnnnntctannnnnnnnnnnacttaaatgggattcacgtgtagatattactcatttataagtttttaata 223  Q
    ||||||||||||| || ||||||||||        ||||           ||||||||||| |||||||||||||||||||||||||||| ||||||       
T  14814663 atattgactctaagagtatccaaaatg--aaaaaatcta--tttttttttacttaaatggggttcacgtgtagatattactcatttataaattttta--- 14814755  T
Q  224 ataatacataataaacactcaattcattcaactcaacaactcatgcgattttttaaataaaattcactaataattttatatcagctattactaacnnnnn 323  Q
           |||||||||||||||||| |||||||||||| ||||| |||||| ||||||  ||||||||||||||||||||||| |||||||||||         
T  14814756 -------ataataaacactcaattccttcaactcaacacctcatacgatttcttaaatgtaattcactaataattttatatcatctattactaac-tttt 14814847  T
Q  324 nnaaggatctattaatatctatgtgtcaccatatttcca 362  Q
      |||||||||||||||||||||||||||||||||||||    
T  14814848 ttaaggatctattaatatctatgtgtcaccatatttcca 14814886  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 248
Target Start/End: Original strand, 16117871 - 16117943
Alignment:
Q  176 ttaaatgggattcacgtgtagatattactcatttataagtttttaataataatacataataaacactcaattc 248  Q
    |||||||||  ||||||||| |||| |||||||||||| |||||||||  ||||| |||||| ||||||||||    
T  16117871 ttaaatgggtctcacgtgtacatatcactcatttataattttttaatatcaatacctaataagcactcaattc 16117943  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 248
Target Start/End: Complemental strand, 11922110 - 11922036
Alignment:
Q  174 acttaaatgggattcacgtgtagatattactcatttataagtttttaataataatacataataaacactcaattc 248  Q
    |||||||||||  ||||||||| | ||||||||||||||| ||||||||| || ||| ||| || ||||||||||    
T  11922110 acttaaatgggtctcacgtgtacacattactcatttataattttttaatagtagtacctaaaaagcactcaattc 11922036  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 258
Target Start/End: Complemental strand, 26312623 - 26312553
Alignment:
Q  188 cacgtgtagatattactcatttataagtttttaataataatacataataaacactcaattcattcaactca 258  Q
    |||||||| | || |||||||||||| ||||||||| || ||| |||||| |||||||||| | |||||||    
T  26312623 cacgtgtacacatcactcatttataattttttaatagtagtacctaataagcactcaattcctccaactca 26312553  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 55272909 - 55272864
Alignment:
Q  201 tactcatttataagtttttaataataatacataataaacactcaat 246  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||    
T  55272909 tactcatttataattttttaataatagtacataataaacactcaat 55272864  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 3973245 - 3973289
Alignment:
Q  202 actcatttataagtttttaataataatacataataaacactcaat 246  Q
    |||||||||||| ||||||||| |||||| || ||||||||||||    
T  3973245 actcatttataaatttttaatagtaatacttagtaaacactcaat 3973289  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 3993859 - 3993815
Alignment:
Q  202 actcatttataagtttttaataataatacataataaacactcaat 246  Q
    |||||||||||| ||||||||| |||||| || ||||||||||||    
T  3993859 actcatttataaatttttaatagtaatacttagtaaacactcaat 3993815  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 3996631 - 3996587
Alignment:
Q  202 actcatttataagtttttaataataatacataataaacactcaat 246  Q
    |||||||||||| ||||||||| |||||| || ||||||||||||    
T  3996631 actcatttataaatttttaatagtaatacttagtaaacactcaat 3996587  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 4010170 - 4010126
Alignment:
Q  202 actcatttataagtttttaataataatacataataaacactcaat 246  Q
    |||||||||||| ||||||||| |||||| || ||||||||||||    
T  4010170 actcatttataaatttttaatagtaatacttagtaaacactcaat 4010126  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 38902129 - 38902061
Alignment:
Q  175 cttaaatgggattcacgtgtagatattactcatttataagtttttaataataatacataataaacactc 243  Q
    ||||||||||  ||||||||| |||| |||||||||||| ||||||||| || ||| |||||| |||||    
T  38902129 cttaaatgggtctcacgtgtacatatcactcatttataattttttaatagtagtacctaataagcactc 38902061  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 246
Target Start/End: Complemental strand, 46487110 - 46487071
Alignment:
Q  207 tttataagtttttaataataatacataataaacactcaat 246  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  46487110 tttataattttttaataataatacctaataaacactcaat 46487071  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 11241464 - 11241510
Alignment:
Q  202 actcatttataagtttttaataataatacataataaacactcaattc 248  Q
    |||||||||||| ||||||||| || |||||||||||||| ||||||    
T  11241464 actcatttataattttttaatattagtacataataaacacccaattc 11241510  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 23333898 - 23333854
Alignment:
Q  202 actcatttataagtttttaataataatacataataaacactcaat 246  Q
    |||||||||||| |||||||||||| ||| |||||| ||||||||    
T  23333898 actcatttataattttttaataatagtacttaataagcactcaat 23333854  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 246
Target Start/End: Original strand, 29857109 - 29857148
Alignment:
Q  207 tttataagtttttaataataatacataataaacactcaat 246  Q
    ||||||| ||||||||||||||||||||||| ||||||||    
T  29857109 tttataattttttaataataatacataataatcactcaat 29857148  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 37189062 - 37189117
Alignment:
Q  206 atttataagtttttaataataatacataataaacactcaattcattcaactcaaca 261  Q
    |||||||| |||||||||||||||||||||||  ||||||| ||| ||| ||||||    
T  37189062 atttataattttttaataataatacataataattactcaatccatgcaattcaaca 37189117  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 246
Target Start/End: Original strand, 10180571 - 10180643
Alignment:
Q  174 acttaaatgggattcacgtgtagatattactcatttataagtttttaataataatacataataaacactcaat 246  Q
    ||||||||||   ||||||||| |||| |||||||||||| ||||||||| || ||| ||||||  |||||||    
T  10180571 acttaaatggatctcacgtgtacatatcactcatttataattttttaatagtagtacctaataagaactcaat 10180643  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 22628623 - 22628563
Alignment:
Q  186 ttcacgtgtagatattactcatttataagtttttaataataatacataataaacactcaat 246  Q
    ||||| |||| |||| |||| ||||||| |||||||||  | |||||||||||||||||||    
T  22628623 ttcacctgtatatatcactcgtttataattttttaataggagtacataataaacactcaat 22628563  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 11200560 - 11200498
Alignment:
Q  175 cttaaatgggattcacgtgtagatattactcatttataagtttttaataataatacataataa 237  Q
    |||||||| || ||||| ||| | || |||||||||||| |||||||||||||||| ||||||    
T  11200560 cttaaatgagactcacgcgtacacatcactcatttataattttttaataataatacctaataa 11200498  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 18396505 - 18396550
Alignment:
Q  203 ctcatttataagtttttaataataatacataataaacactcaattc 248  Q
    ||||||||||| |||||||||||| ||| ||||||| |||||||||    
T  18396505 ctcatttataattttttaataatagtacctaataaatactcaattc 18396550  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 29811560 - 29811520
Alignment:
Q  206 atttataagtttttaataataatacataataaacactcaat 246  Q
    |||||||| |||||||||||| || ||||||||||||||||    
T  29811560 atttataattttttaataatagtaaataataaacactcaat 29811520  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 1946974 - 1947025
Alignment:
Q  215 tttttaataataatacataataaacactcaattcattcaactcaacaactcat 267  Q
    |||||||||||||||| |||||| |||||||||| ||||||||| || |||||    
T  1946974 tttttaataataatac-taataagcactcaattccttcaactcatcatctcat 1947025  T

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