View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_low_17 (Length: 518)
Name: NF14435_low_17
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_low_17 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 141 - 496
Target Start/End: Complemental strand, 22684888 - 22684532
Alignment:
| Q |
141 |
gaaaacaaaattaatctccttgttccttttttcttgactttaaattcatgttttatcacatagatgacacattttaacaaatttatgtgttttgttttat |
240 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22684888 |
gaaatcaaaattaatctccttgttccttttttcttgactttaaattcatgttttatcacatagatgacacattttaacaaatttctgtgttttgttttat |
22684789 |
T |
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| Q |
241 |
ttataggttgtgactcctttggcaaaaattgccttaatattattgcctgttgcatcaagcatagaggaacttgtcgtcccttctcctaggctaagatgtt |
340 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22684788 |
ttataggttgtgactcctttggcaaaatttgccttaatattattgcctgttgcatcaagcatagaggaacttgtcgtcccttctcctaggctaagatgtt |
22684689 |
T |
|
| Q |
341 |
atgctatgtctctttttatcagaacaactttagtgttttcaagtttatttgtggccctctcttttccatattttggtaagtattgtccatactattatta |
440 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22684688 |
atgctatgtctctttttattaaaacaactttagtgttttcaagtttatttgtggccctctcttttccatattttggtaagtattgtccatactattatta |
22684589 |
T |
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| Q |
441 |
ctacctttgtgcgttgctctattgcacttacacttctgatg-aaagcgtctctggtg |
496 |
Q |
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| T |
22684588 |
ctacctttgtgcgttgctctgttgcacttacacttctgatgaaaagtgtctctggtg |
22684532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 178 - 458
Target Start/End: Complemental strand, 22696146 - 22695870
Alignment:
| Q |
178 |
ctttaaattcatgttttatcacatagatgacacattttaacaaatttatgtgttttgttttatttataggttgtgactcctttggcaaaaattgccttaa |
277 |
Q |
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| T |
22696146 |
ctttaaattcatgttttatcacatagatgacaaattttaacaaatttctgtgttttattttacatataggttgtgactcctctggcaaaatatgccttaa |
22696047 |
T |
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| Q |
278 |
tattattgcctgttgcatcaagcatagaggaacttgtcgtcccttctcctaggctaagatgttatgctatgtctctttttatcagaacaactttagtgtt |
377 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| || | ||||||||| |||||||| | |
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| T |
22696046 |
cattattgcctattgcatcaagcatagaggaactt---gtcccttctcctaggctaagatgttatcctatgtctattctcatcagaacagctttagtggt |
22695950 |
T |
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| Q |
378 |
ttcaagtttatttgtggccctctcttttccatattttggtaagtattgtccatactattattactacctttgtgcgttgct |
458 |
Q |
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| T |
22695949 |
ttcaagtttagttgtggccctctcttttccatattttggtaagttttgt-cataccattattactacctttgtgcattgct |
22695870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 24493299 - 24493177
Alignment:
| Q |
25 |
ttttgatgggagaaaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcggtctagacaaatgtaagagtgatatt |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
24493299 |
ttttgatgggagaaaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcggtctagacaaatataagagtgatatt |
24493200 |
T |
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| Q |
125 |
gtgtagaataaccaaggaaaaca |
147 |
Q |
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| T |
24493199 |
gtgtagaataaccaaggaaaaca |
24493177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 92664 - 92542
Alignment:
| Q |
25 |
ttttgatgggagaaaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcggtctagacaaatgtaagagtgatatt |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
92664 |
ttttgatgggagaaaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcgatctagacaaatgtaagagtgatatt |
92565 |
T |
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| Q |
125 |
gtgtagaataaccaaggaaaaca |
147 |
Q |
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|||||||||||||||| |||||| |
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| T |
92564 |
gtgtagaataaccaagtaaaaca |
92542 |
T |
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