View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_low_18 (Length: 516)
Name: NF14435_low_18
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_low_18 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: scaffold0060 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 7 - 412
Target Start/End: Original strand, 63521 - 63924
Alignment:
| Q |
7 |
gagagatgaagatcacacttacgatatagccgaataattattctttttccttccaatcaaattaatcaaaacatgttattggctatataataatgtacat |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
63521 |
gagaaatgaagatcacacttacgatatagccgaataattattctttttccttccaatcaaattaatcaaaacatgttattggctatataataatgtacat |
63620 |
T |
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| Q |
107 |
tgnnnnnnnnn---ccaccaatatcatatttttcaatcatcatgacaatccaaaatcgtatcaagagaaacacaaacatcactagaaacaacaacaaact |
203 |
Q |
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| T |
63621 |
tgaaaaaaaaaaaaccaccaacatcatatttttcaatcatcatgaccatccaaaatcgtatcaagagaaacacaaacatcactagaaacaaca-caaact |
63719 |
T |
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| Q |
204 |
taacaatttgtctccacatccccatcttaacaacaaatcccaccatcctaaccacactcctaacaccccaatcaacatcctcaaccaaaccctctctaca |
303 |
Q |
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| T |
63720 |
taacaatttgactccacatcccc----taacaacaaatcccaccatcccaaccatactcctaacaccccaatcaacatcctcaaccaaaccctctctaca |
63815 |
T |
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| Q |
304 |
aaaccccaaaaccaaacccttaaaagaatcataactcaccacaaaacctttcaaaaccatcttctcaacaacccctttagcctcctaaaatctcttcaaa |
403 |
Q |
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| T |
63816 |
aaaccccaaaaccaaacccttaaaagaatcataactcaccactaaacctttcaaaaccatcttctcaacaacccctttagcctcctaaaatctcttcaaa |
63915 |
T |
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| Q |
404 |
tcgatcaaa |
412 |
Q |
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| T |
63916 |
tcaatcaaa |
63924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 150 - 484
Target Start/End: Complemental strand, 30301259 - 30300928
Alignment:
| Q |
150 |
aatccaaaatcgtatcaagagaaacacaaacatcactagaaacaacaacaaacttaacaatttgtctccacatccccatcttaacaacaaatcccaccat |
249 |
Q |
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| T |
30301259 |
aatccaaaatcttatcaaaagaaacactaacatctctagaaacaacaatacatctaacaattggtctccacatccccatcctaggaacaaaaccca---t |
30301163 |
T |
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| Q |
250 |
cctaaccacactcctaacaccccaatcaacatcctcaaccaaaccctctctacaaaaccccaaaaccaaacccttaaaagaatcataactcaccacaaaa |
349 |
Q |
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| T |
30301162 |
cctaaccatactcctaacaccccaatcaacttcctcaatcaacccttctctacaaaaccccaaaaccaaacccttaaaagaatcataactcaccacaaaa |
30301063 |
T |
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| Q |
350 |
cctttcaaaaccatcttctcaacaacccctttagcctcctaaaatctcttcaaatcgatcaaatcatacaaaatatgttgataagaactctcgtgaggat |
449 |
Q |
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| T |
30301062 |
cccttcaaaaccatcttctcaacaacccctttagcctcctcaaatctcttcaaatcaatcaaaccatacaacacatgctgataagaactctcattaggat |
30300963 |
T |
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| Q |
450 |
aacacccattcctcatcatcacatcttccaaaacc |
484 |
Q |
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| T |
30300962 |
aacacccattcctcatcatcacatcttccaaaacc |
30300928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 30302273 - 30302187
Alignment:
| Q |
118 |
ccaccaatatcatatttttcaatcatcatgacaatccaaaatcgtatcaagagaaacacaaacatcactagaaacaacaacaaactt |
204 |
Q |
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| T |
30302273 |
ccaccaacatcatatttttcaatcatcatgactatccaaaatcgtatcaagagaaacacaaacatcactaacagcaacaacacactt |
30302187 |
T |
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