View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14435_low_20 (Length: 509)

Name: NF14435_low_20
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14435_low_20
NF14435_low_20
[»] chr2 (6 HSPs)
chr2 (313-494)||(24531073-24531254)
chr2 (313-494)||(24523648-24523829)
chr2 (4-80)||(24523343-24523419)
chr2 (4-76)||(24530770-24530842)
chr2 (136-184)||(24523475-24523523)
chr2 (136-182)||(24530902-24530948)
[»] chr3 (2 HSPs)
chr3 (321-481)||(289347-289505)
chr3 (314-413)||(277400-277502)


Alignment Details
Target: chr2 (Bit Score: 178; Significance: 9e-96; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 313 - 494
Target Start/End: Original strand, 24531073 - 24531254
Alignment:
Q  313 tattaattttatatctagttacataatataaagcaagtttgtaccaaaaaataaagtaatgtatagaaagtgcaataggacaatatttaggagtacaaat 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24531073 tattaattttatatctagttacataatataaagcaagtttgtaccaaaaaataaagtaatgtatagaaagttcaataggacaatatttaggagtacaaat 24531172  T
Q  413 ataatatgatgagctaaactctagtgcacaattaatgcagaataaaactgttaaccaaccattaaattttttacaaaaccaa 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24531173 ataatatgatgagctaaactctagtgcacaattaatgcagaataaaactgttaaccaaccattaaattttttacaaaaccaa 24531254  T

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Target: chr2; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 313 - 494
Target Start/End: Original strand, 24523648 - 24523829
Alignment:
Q  313 tattaattttatatctagttacataatataaagcaagtttgtaccaaaaaataaagtaatgtatagaaagtgcaataggacaatatttaggagtacaaat 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24523648 tattaattttatatctagttacataatataaagcaagtttgtaccaaaaaataaagtaatgtatagaaagggcaataggacaatatttaggagtacaaat 24523747  T
Q  413 ataatatgatgagctaaactctagtgcacaattaatgcagaataaaactgttaaccaaccattaaattttttacaaaaccaa 494  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24523748 ataatatgatgagctaaactctagtgcacagttaatgcagaataaaactgttaaccaactattaaattttttacaaaaccaa 24523829  T

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Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 24523343 - 24523419
Alignment:
Q  4 taggagcagagacaaatttaaattcattaaaatgcaacaatatggtagaagcacccaaattatattccacatcgcaa 80  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24523343 taggagcattgacaaatttaaattcattaaaatgcaacaatatggtagaagcacccaaattatattcctcatcgcaa 24523419  T

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Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 24530770 - 24530842
Alignment:
Q  4 taggagcagagacaaatttaaattcattaaaatgcaacaatatggtagaagcacccaaattatattccacatc 76  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||    
T  24530770 taggagcagtgacaaatttaaattcattaaaatgcaataatatggtagaagcacccatattatattcctcatc 24530842  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 24523475 - 24523523
Alignment:
Q  136 aaaaaatattgtctgtaagcatagattgaggaaaccttgtaaaaaaaaa 184  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  24523475 aaaaaatattgtctgtaaacatagatggaggaaaccttgtaaaaaaaaa 24523523  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 24530902 - 24530948
Alignment:
Q  136 aaaaaatattgtctgtaagcatagattgaggaaaccttgtaaaaaaa 182  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||    
T  24530902 aaaaaatattgtctgtaagcatagatggaggaaatcttgtaaaaaaa 24530948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 8e-50; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 321 - 481
Target Start/End: Original strand, 289347 - 289505
Alignment:
Q  321 ttatatctagttacataatataaagcaagtttgtaccaaaaaataaagtaatgtatagaaagtgcaataggacaatatttaggagtacaaatataatatg 420  Q
    |||||| ||||||||||||||||||||||||||||||||||||  || |||||||||| |||| ||||| ||||||||||||||||||||||| ||||||    
T  289347 ttatatatagttacataatataaagcaagtttgtaccaaaaaaataa-taatgtatagcaagttcaataagacaatatttaggagtacaaata-aatatg 289444  T
Q  421 atgagctaaactctagtgcacaattaatgcagaataaaactgttaaccaaccattaaattt 481  Q
    ||||| ||||||  | |||||||||||||||||||||||||||||||||||||||| ||||    
T  289445 atgagataaactgaaatgcacaattaatgcagaataaaactgttaaccaaccattatattt 289505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 413
Target Start/End: Original strand, 277400 - 277502
Alignment:
Q  314 attaattttatatctagttacataatataaagcaagtttgtaccaaaa---aataaagtaatgtatagaaagtgcaataggacaatatttaggagtacaa 410  Q
    |||||| ||| || || ||||||||| || | ||||||||||||||||   |||||| |||| |||||||| ||||||||||| |  |||||||||| ||    
T  277400 attaatattacatataattacataatgtataacaagtttgtaccaaaaaataataaaataatctatagaaaatgcaataggactagttttaggagtataa 277499  T
Q  411 ata 413  Q
    |||    
T  277500 ata 277502  T

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