View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_low_21 (Length: 503)
Name: NF14435_low_21
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 42957252 - 42957592
Alignment:
| Q |
1 |
atattagatttttaggaacaagtagaatacaagtgggttcaattattcaaataaattaatactccactttatacattcaactagggagatgtcagagttt |
100 |
Q |
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| T |
42957252 |
atattaaatttttaggaacaagtaaaatacaagtggattcaattattcaaataaattaatactccactttatacattcaactagggagatgtcagagttt |
42957351 |
T |
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| Q |
101 |
atgaacaaatgtcccagtacacactacattaatccaaaaaacaaaggtgcgctacttatatttggaccnnnnnnngacagtatattgggacttacatgac |
200 |
Q |
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| T |
42957352 |
atgaacaaatgtcccagtacacactacattaatccaaaaaacaaaggtgcactacttatatttggacctttttttgacagtatattgggacttacaagac |
42957451 |
T |
|
| Q |
201 |
ttgcattacaagttttaatctatagatttatttgatagatactcttatttattaagattggtatatgcttaacattaacatatacgagaaaataaatcat |
300 |
Q |
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| T |
42957452 |
ttgcattacaagttttaatctatagatttatttgatagatactcttatttattaagattggtatatgcttaacattaacatatacgagaaaataaatcat |
42957551 |
T |
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| Q |
301 |
atatgattttacgaaacatctaatagtaagtagtttatgtg |
341 |
Q |
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| T |
42957552 |
atatgattttacgaaacatctaatagtaagtagtttatgtg |
42957592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 405 - 488
Target Start/End: Original strand, 42957657 - 42957740
Alignment:
| Q |
405 |
gtaaccacccttgcttattttttaagaaaaataatggacatgggccgaactaatgtgggattcttaggttcttagccagaaaag |
488 |
Q |
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| T |
42957657 |
gtaaccacccttgcttattttttaagaaaaataagtgacatgggccgaactaatgtgggattcttaggttcttagtcagaaaag |
42957740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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