View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_low_23 (Length: 496)
Name: NF14435_low_23
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 128; Significance: 6e-66; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 221 - 356
Target Start/End: Complemental strand, 33738620 - 33738485
Alignment:
| Q |
221 |
aagtgaatttcgcaaccgtttaacacttaatactatagtatcaacacaacagcgccgtcgtctctccgcctactgagctcgccggagttatcatcatcgt |
320 |
Q |
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| T |
33738620 |
aagtgaatttcgcaaccgtttaacacttaatactatagtatcaactcaacagcgccgtcgtctctccgcctactgagctcgccggagttatcatcatcgt |
33738521 |
T |
|
| Q |
321 |
tcattttgttatcctcaggttcgaatctatcctctc |
356 |
Q |
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| T |
33738520 |
tcattttgatatcctcaggttcgaatctatcctctc |
33738485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 33738847 - 33738740
Alignment:
| Q |
9 |
tcgaagaatatcaacgattaagactcccctagaaggtattcttacatgtgtcagactcttcaaaatccaaaattctatcatttaaacctatttttctatt |
108 |
Q |
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||||| || |||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33738847 |
tcgaaaaaaatcaacgattaagactcccctaaaaggtattcttacatgtgtccgcctcttcaaaatccaaaattctatcatttaaacctatttttctatt |
33738748 |
T |
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| Q |
109 |
tttcatat |
116 |
Q |
| |
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|||||||| |
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| T |
33738747 |
tttcatat |
33738740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 391 - 496
Target Start/End: Complemental strand, 33738450 - 33738345
Alignment:
| Q |
391 |
accatcacgaaaacgaaatctgcatatatttgttttctgccatggaannnnnnnnnctgctttaaatgttatacaagattcaaatttattcaatatatat |
490 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| || |
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| T |
33738450 |
accatcacgaaaacgaaatctgcatatatttgttttctgccatggaatttatttttctgatttaaatgttatacaagcttcaaatttattcaatatagat |
33738351 |
T |
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| Q |
491 |
gattag |
496 |
Q |
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|||||| |
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| T |
33738350 |
gattag |
33738345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 103
Target Start/End: Complemental strand, 8120188 - 8120153
Alignment:
| Q |
68 |
tcaaaatccaaaattctatcatttaaacctattttt |
103 |
Q |
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||||||||||||||||||||||||| |||||||||| |
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| T |
8120188 |
tcaaaatccaaaattctatcatttagacctattttt |
8120153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 6395431 - 6395474
Alignment:
| Q |
68 |
tcaaaatccaaaattctatcatttaaacctatttttctattttt |
111 |
Q |
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|||||||||||||||| |||||||| |||||||||| ||||||| |
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| T |
6395431 |
tcaaaatccaaaattcaatcatttagacctatttttttattttt |
6395474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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