View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_low_25 (Length: 490)
Name: NF14435_low_25
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 466; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 23853409 - 23852944
Alignment:
| Q |
1 |
tagataccaattaactagagttcaattacatagagactcaattgtgtttgaatataaggtgtccccaaatataaataagtgctcaagatatgcacggaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23853409 |
tagataccaattaactagagttcaattacatagagactcaattgtgtttgaatataaggtgtccccaaatataaataagtgctcaagatatgcacggaaa |
23853310 |
T |
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| Q |
101 |
tagaacatcaacatgactcgttccaaatataaaaatgaacaaatgaaaggacataataaaatgagatgcctatttaagttgtgttggttgtgtcacggtt |
200 |
Q |
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| T |
23853309 |
tagaacatcaacatgactcgttccaaatataaaaatgaacaaatgaaaggacataataaaatgagatgcctatttaagttgtgttggttgtgtcacggtt |
23853210 |
T |
|
| Q |
201 |
gtgttgtgcccacccgacttgcagctctgcttcagtctcttcccttaaatatggatagaaaccaaagttttgctttttcagttgtttcacttttgagtac |
300 |
Q |
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| T |
23853209 |
gtgttgtgcccacccgacttgcagctctgcttcagtctcttcccttaaatatggatagaaaccaaagttttgctttttcagttgtttcacttttgagtac |
23853110 |
T |
|
| Q |
301 |
atatttcatgttactatgttcctgtggccattcatcatttggttgcatggaacaagagaggaaagctcttcttgaaatcaaaggaagctttaatgatcca |
400 |
Q |
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| T |
23853109 |
atatttcatgttactatgttcctgtggccattcatcatttggttgcatggaacaagagaggaaagctcttcttgaaatcaaaggaagctttaatgatcca |
23853010 |
T |
|
| Q |
401 |
ttatttagactttcctcttggaaaggaaatgactgttgtaaatggaaaggtataagttgcagcaac |
466 |
Q |
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| T |
23853009 |
ttatttagactttcctcttggaaaggaaatgactgttgtaaatggaaaggtataagttgcagcaac |
23852944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 169 - 466
Target Start/End: Complemental strand, 23752535 - 23752243
Alignment:
| Q |
169 |
cctatttaagttgtgttggttgtgtcacggttgtgttgtgcccacccgacttgcagctctgcttcagtctcttcccttaaatatggatagaaaccaaagt |
268 |
Q |
| |
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|||||||||||||||||||||| ||| | ||||||||||||| |||| |||| ||||||| || ||||||| ||||||| |||||||||||||| |
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| T |
23752535 |
cctatttaagttgtgttggttgagtccc-----cgttgtgcccacccaacttacagcgttgcttcattcacttccctcaaatatgcatagaaaccaaagt |
23752441 |
T |
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| Q |
269 |
tttgctttttcagttgtttcacttttgagtacatatttcatgttactatgttcctgtggccattcatcatttggttgcatggaacaagagaggaaagctc |
368 |
Q |
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| T |
23752440 |
tatgcttttgttgttgtttcccttttgagcacatgtttcatgttactatgttctagtagccattcatcatttggttgcatagaacaagagaggcaagcac |
23752341 |
T |
|
| Q |
369 |
ttcttgaaatcaaaggaagctttaatgatccattatttagactttcctcttggaaaggaaatgactgttgtaaatggaaaggtataagttgcagcaac |
466 |
Q |
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| T |
23752340 |
ttcttgaactcaaaggaagctttaatgatacatcattaagactttcctcttgggaaggaaatgaatgttgtaaatggaaaggtataagttgcagcaac |
23752243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 239 - 466
Target Start/End: Complemental strand, 22619863 - 22619636
Alignment:
| Q |
239 |
cttcccttaaatatggatagaaaccaaagttttgctttttcagttgtttcacttttgagtacatatttcatgttactatgttcctgtggccattcatcat |
338 |
Q |
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||||||| ||||||| ||||||||||||||| ||||||| |||||||| |||||||| |||| |||||||||||||||||| || |||||||||||| |
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| T |
22619863 |
cttccctcaaatatgcatagaaaccaaagttatgcttttgttgttgtttcccttttgagcacatgtttcatgttactatgttctagtagccattcatcat |
22619764 |
T |
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| Q |
339 |
ttggttgcatggaacaagagaggaaagctcttcttgaaatcaaaggaagctttaatgatccattatttagactttcctcttggaaaggaaatgactgttg |
438 |
Q |
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|||||||| | |||||||||||| |||||||| | | | |||||||||||||||||||| ||| ||| ||||||||||||||| |||||||||| ||||| |
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| T |
22619763 |
ttggttgcttagaacaagagaggcaagctcttttagcactcaaaggaagctttaatgatacatcattaagactttcctcttgggaaggaaatgaatgttg |
22619664 |
T |
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| Q |
439 |
taaatggaaaggtataagttgcagcaac |
466 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
22619663 |
taaatggaaaggtataagttgcagcaac |
22619636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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