View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14435_low_26 (Length: 484)
Name: NF14435_low_26
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_low_26 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 437
Target Start/End: Original strand, 39956309 - 39956731
Alignment:
| Q |
18 |
tagtacacaaattaaaacaaacttaagcgtaacacactctgctatattccagtaaattcttctccgtaaaccaaaccactctaaactctccaaacccctt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39956309 |
tagtacacaaattaaaacaaacttaagcgtaacagactctgctatattccagtaaattcttctccgtaaaccaaaccactctaaactctcgaaacccctt |
39956408 |
T |
|
| Q |
118 |
tactataaatagacacagcatgtcaacctagtagtcacgaaagcgacttcattaacaatcgcaaaacaaaaaccaaacactcaacacaaccacactcttc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
39956409 |
tactataaatagacacagcatgtcaacctagtagtcacgaaagcgacttcattaacaatcgcaaaacaaaaaccaaacactcaacacaaccacacttttc |
39956508 |
T |
|
| Q |
218 |
actcat---cttcatcgtaacatggcttcagaacctcatcgacgtgacgtcgaaacctccgatgaacaacttgatgagatttccgttgaaaaggggtttg |
314 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
39956509 |
actcatcatcttcatcgtaacatggcttcagaacctcatcgacgtgacgtcgaaacctccgatgaacaacttgatgagatttccattgaaaaagggtttg |
39956608 |
T |
|
| Q |
315 |
aaggaaaatctgttccttcgtggcagaaacaggttacggttagggcaatagtagtgagtatcatgttatcagtgatgttcactttcattgtgatgaagct |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39956609 |
aaggaaaatctgttccttcgtggcagaaacaggttacggctagggcaatagtcgtgagtatcatgctatcagtgatgttcactttcattgtgatgaagct |
39956708 |
T |
|
| Q |
415 |
gaatctcactactgggattattc |
437 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
39956709 |
gaatctcactactgggattattc |
39956731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 154 - 472
Target Start/End: Original strand, 39940766 - 39941085
Alignment:
| Q |
154 |
acgaaagcgacttcattaacaatcgcaaaacaaaaaccaaacactca-acacaaccacactcttcactcatcttcatcgtaacatggcttcagaacctca |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39940766 |
acgaaagcgacttcattaacaatcgcaaaatcaaaaccaaacactctgatacaaccacactcttcactcatcttcatcgtaacatggctccagaacctca |
39940865 |
T |
|
| Q |
253 |
tcgacgtgacgtcgaaacctccgatgaacaacttgatgagatttccgttgaaaaggggtttgaaggaaaatctgttccttcgtggcagaaacaggttacg |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39940866 |
tcgacgtgacgtcgaaacctccgatgaacaacttgatgagatttccattgaaaaagggtttgaaggaaaatctgttccttcgtggcagaaacaggttact |
39940965 |
T |
|
| Q |
353 |
gttagggcaatagtagtgagtatcatgttatcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattccctctttgaatgttt |
452 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39940966 |
gttagggcaatagtcgtgagtatcatgctatcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattccctctttgaatgttt |
39941065 |
T |
|
| Q |
453 |
cggctgggttgttagggttc |
472 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
39941066 |
cggctgggttgttagggttc |
39941085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 39940661 - 39940732
Alignment:
| Q |
32 |
aaacaaacttaagc-gtaacacactctgctatattccagtaaattcttctccgtaaaccaaaccactctaaactctc |
107 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||||||||| |||| ||||||| | |||||||||||||||||| |
|
|
| T |
39940661 |
aaacaaacctaagctgttacacactctgctatattccagcaaatccttctccat-----aaaccactctaaactctc |
39940732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 7e-50; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 275 - 471
Target Start/End: Complemental strand, 28750890 - 28750694
Alignment:
| Q |
275 |
gatgaacaacttgatgagatttccgttgaaaaggggtttgaaggaaaatctgttccttcgtggcagaaacaggttacggttagggcaatagtagtgagta |
374 |
Q |
| |
|
||||||||||| || |||||||| || ||||| ||||||||||||| |||||||||| |||||||||||||||| || |||||||||||| | | |||| |
|
|
| T |
28750890 |
gatgaacaactcgaggagatttctgtggaaaaagggtttgaaggaacatctgttcctacgtggcagaaacaggtcactgttagggcaatatttgcgagtc |
28750791 |
T |
|
| Q |
375 |
tcatgttatcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattccctctttgaatgtttcggctgggttgttagggtt |
471 |
Q |
| |
|
||||||| || ||||||||||| || || ||||||||| |||||||||| |||||||||||||| || ||||||||||| ||||| ||||||||||| |
|
|
| T |
28750790 |
tcatgttgtcggtgatgttcacgtttatcgtgatgaagttgaatctcacaactgggattattccttcgttgaatgtttctgctggattgttagggtt |
28750694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 300 - 471
Target Start/End: Complemental strand, 28742020 - 28741849
Alignment:
| Q |
300 |
ttgaaaaggggtttgaaggaaaatctgttccttcgtggcagaaacaggttacggttagggcaatagtagtgagtatcatgttatcagtgatgttcacttt |
399 |
Q |
| |
|
||||||| ||||||||||||||| ||||||| |||||||||| |||||||| ||||||||| || | |||||| ||||||| || || |||||||| || |
|
|
| T |
28742020 |
ttgaaaaagggtttgaaggaaaacttgttcctacgtggcagaagcaggttactgttagggcattattcgtgagtctcatgttgtcggtaatgttcacgtt |
28741921 |
T |
|
| Q |
400 |
cattgtgatgaagctgaatctcactactgggattattccctctttgaatgtttcggctgggttgttagggtt |
471 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
28741920 |
cattgtgatgaaactgaatctcacaactgggattattccttctttgaatgtttcagctgggttgttagggtt |
28741849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 28742382 - 28742314
Alignment:
| Q |
22 |
acacaaattaaaacaaacttaagcgtaacacactctgctatattccagtaaattcttctccgtaaacca |
90 |
Q |
| |
|
||||| ||| |||| ||| |||| |||| ||||||||||||||||||| |||| |||||| ||||||| |
|
|
| T |
28742382 |
acacagatttaaactaacgtaagagtaagacactctgctatattccagcaaatccttctctataaacca |
28742314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 468
Target Start/End: Complemental strand, 7963852 - 7963656
Alignment:
| Q |
274 |
cgatgaacaacttgatgagatttccgttgaaaaggggtttgaaggaaaa-tctgttccttcgtggcagaaacaggttacggttagggcaatagtagtgag |
372 |
Q |
| |
|
|||||||||| | || ||||||| || ||||| | ||||||||||||| || ||||| ||||||||| | |||| ||||||| | ||| | ||||| |
|
|
| T |
7963852 |
cgatgaacaattagaggagatttatgtggaaaaagtgtttgaaggaaaaatcaattcctatatggcagaaaaatgttatggttaggcctatattcgtgag |
7963753 |
T |
|
| Q |
373 |
tatcatgtta-tcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattccctctttgaatgtttcggctgggttgttagg |
468 |
Q |
| |
|
| ||||||| || |||||||||| ||||| ||||||| ||||||||||| ||||||||||||| || |||||||||| |||||||||||||| |
|
|
| T |
7963752 |
tctcatgttggtcgatgatgttcacattcatcatgatgaatctgaatctcacaactgggattattcattcgttgaatgtttttgctgggttgttagg |
7963656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 458
Target Start/End: Complemental strand, 7961298 - 7961143
Alignment:
| Q |
303 |
aaaaggggtttgaaggaaaatctgttccttcgtggcagaaacaggttacggttagggcaatagtagtgagtatcatgttatcagtgatgttcactttcat |
402 |
Q |
| |
|
|||| ||||||||||||||||| |||||| |||||| || | || ||||||| ||| ||| | |||||| || | || | || |||||||| ||||| |
|
|
| T |
7961298 |
aaaaagggtttgaaggaaaatcagttcctatgtggcaccaaaatgtcacggttatggctatattcgtgagtctcgttttgacggtaatgttcacattcat |
7961199 |
T |
|
| Q |
403 |
tgtgatgaagctgaatctcactactgggattattccctctttgaatgtttcggctg |
458 |
Q |
| |
|
||||||||||| |||||||| ||||| |||||||| || || |||||||| |||| |
|
|
| T |
7961198 |
cgtgatgaagctcaatctcacaactggaattattccttcattaaatgtttctgctg |
7961143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University