View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_low_27 (Length: 482)
Name: NF14435_low_27
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_low_27 |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: scaffold0287 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 18 - 476
Target Start/End: Original strand, 14490 - 14948
Alignment:
| Q |
18 |
aaaaatatctagccatgttcattcctttgaaatatcaaaccttagtgagatcctaatgtctgtcttaagctctatagtatgtagaattgcttttggaaaa |
117 |
Q |
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||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14490 |
aaaaatatctaaccatgttcattcctctgaaatttcaaaccttagtgagatcctaatgtctgtcttaagctctatagtatgtagaattgcttttggaaaa |
14589 |
T |
|
| Q |
118 |
agttatgagcatgaagggggtgagaaaagcaggttccataatttacttcatgagacagaagctattttcctttccttctttgtttcagatcatattcctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14590 |
agttatgagcatgaagggggtgagaaaagcaggttccataatttacttcatgagacagaagctattttcctttccttctttgtttcagatcatattcctt |
14689 |
T |
|
| Q |
218 |
ttatggggtggattgataaactcactggggcaaatgctcgtgttgacaagactttcaaggctttggatgagtttcttgaacaagtccttcaagaacatct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14690 |
ttatggggtggattgataaactcactggggcaaatgctcgtgttgacaagactttcaaggctttggatgagtttcttgaacaagtccttcaagaacatct |
14789 |
T |
|
| Q |
318 |
caatcctaataatcggaagaaagatgaagaagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14790 |
caatcctaataatcggaagaaagatgaagaagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaat |
14889 |
T |
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| Q |
418 |
gatcacatcaaatccgtccttatggtatgttccaaacactatttttattatattcttcg |
476 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14890 |
gatcacatcaaatccgtccttatggtatgttccaaacactatttttattatattgttcg |
14948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 18 - 476
Target Start/End: Complemental strand, 3631595 - 3631137
Alignment:
| Q |
18 |
aaaaatatctagccatgttcattcctttgaaatatcaaaccttagtgagatcctaatgtctgtcttaagctctatagtatgtagaattgcttttggaaaa |
117 |
Q |
| |
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||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3631595 |
aaaaatatctaaccatgttcattcctctgaaatttcaaaccttagtgagatcctaatgtctgtcttaagctctatagtatgtagaattgcttttggaaaa |
3631496 |
T |
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| Q |
118 |
agttatgagcatgaagggggtgagaaaagcaggttccataatttacttcatgagacagaagctattttcctttccttctttgtttcagatcatattcctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3631495 |
agttatgagcatgaagggggtgagaaaagcaggttccataatttacttcatgagacagaagctattttcctttccttctttgtttcagatcatattcctt |
3631396 |
T |
|
| Q |
218 |
ttatggggtggattgataaactcactggggcaaatgctcgtgttgacaagactttcaaggctttggatgagtttcttgaacaagtccttcaagaacatct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3631395 |
ttatggggtggattgataaactcactggggcaaatgctcgtgttgacaagactttcaaggctttggatgagtttcttgaacaagtccttcaagaacatct |
3631296 |
T |
|
| Q |
318 |
caatcctaataatcggaagaaagatgaagaagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3631295 |
caatcctaataatcggaagaaagatgaagaagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaat |
3631196 |
T |
|
| Q |
418 |
gatcacatcaaatccgtccttatggtatgttccaaacactatttttattatattcttcg |
476 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3631195 |
gatcacatcaaatccgtccttatggtatgttccaaacactatttttattatattgttcg |
3631137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 47 - 449
Target Start/End: Complemental strand, 3621169 - 3620767
Alignment:
| Q |
47 |
aaatatcaaaccttagtgagatcctaatgtctgtcttaagctctatagtatgtagaattgcttttggaaaaagttatgagcatgaagggggtgagaaaag |
146 |
Q |
| |
|
|||| ||||||||||||||| || |||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3621169 |
aaatttcaaaccttagtgaggtcttaatgtctgtctcaagttctattgtatgtagaattgcttttggaaaaagttatgagcatgaagggggtgagaaaag |
3621070 |
T |
|
| Q |
147 |
caggttccataatttacttcatgagacagaagctattttcctttccttctttgtttcagatcatattccttttatggggtggattgataaactcactggg |
246 |
Q |
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|||||||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||| ||| |
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| T |
3621069 |
caggttccatggtttacttaatgagacacaagctattttcctttccttttttgtttcagattatattccttttatggggtgggttgataaactcacaggg |
3620970 |
T |
|
| Q |
247 |
gcaaatgctcgtgttgacaagactttcaaggctttggatgagtttcttgaacaagtccttcaagaacatctcaatcctaataatcggaagaaagatgaag |
346 |
Q |
| |
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|||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| |||| |||||||| | |
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| T |
3620969 |
gcaattgctcgtgttgacaacactttcaaggctttggatgagttctttgaacaagtcctcaaggaacatctcaatcctaataataggaaaaaagatgatg |
3620870 |
T |
|
| Q |
347 |
aagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaatgatcacatcaaatccgtccttatggtatg |
446 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||| |
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| T |
3620869 |
aagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaataatcacatcaaagccgtcgttatggtatg |
3620770 |
T |
|
| Q |
447 |
ttc |
449 |
Q |
| |
|
||| |
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|
| T |
3620769 |
ttc |
3620767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 9401208 - 9401162
Alignment:
| Q |
193 |
ttctttgtttcagatcatattccttttatggggtggattgataaact |
239 |
Q |
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||||||||||| ||| ||||||| |||||||| |||||||||||||| |
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| T |
9401208 |
ttctttgtttctgattatattccatttatgggttggattgataaact |
9401162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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