View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14435_low_29 (Length: 448)

Name: NF14435_low_29
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14435_low_29
NF14435_low_29
[»] chr6 (7 HSPs)
chr6 (18-445)||(6588668-6589095)
chr6 (194-333)||(6397130-6397268)
chr6 (267-414)||(6416330-6416477)
chr6 (268-413)||(6594189-6594334)
chr6 (272-336)||(8913659-8913723)
chr6 (268-414)||(7993768-7993914)
chr6 (268-341)||(6432591-6432664)
[»] chr5 (4 HSPs)
chr5 (44-414)||(28532075-28532448)
chr5 (64-123)||(41888933-41888992)
chr5 (239-320)||(41889108-41889189)
chr5 (44-100)||(29021373-29021429)
[»] chr4 (6 HSPs)
chr4 (41-420)||(21833746-21834122)
chr4 (268-415)||(53761371-53761518)
chr4 (299-405)||(1600780-1600886)
chr4 (49-94)||(1601088-1601133)
chr4 (295-414)||(55908338-55908457)
chr4 (78-170)||(641537-641629)
[»] chr7 (4 HSPs)
chr7 (195-414)||(10614957-10615170)
chr7 (44-99)||(10615269-10615324)
chr7 (308-419)||(10169762-10169873)
chr7 (308-419)||(10177287-10177398)
[»] chr3 (2 HSPs)
chr3 (48-416)||(51763815-51764180)
chr3 (267-414)||(13470320-13470467)
[»] chr1 (1 HSPs)
chr1 (44-420)||(19467870-19468243)
[»] chr2 (1 HSPs)
chr2 (295-414)||(1037274-1037393)
[»] chr8 (1 HSPs)
chr8 (295-341)||(17627669-17627715)


Alignment Details
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 6588668 - 6589095
Alignment:
Q  18 atcacttcatcatgatgaattccctgcttcacatttaattgactcattggtgagtttgaagagtttgacttgtcttggtttgtctgctttgaatatctcc 117  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6588668 atcacttcatcatgatgaattcactgcttcacatttaattgactcattggtgagtttgaagagtttgacttgtcttggtttgtctgctttgaatatctcc 6588767  T
Q  118 gatgagtttctctacactattgcaagtaaacgtcttcctttgacaagacttgtactcaaatattgttctggccgttattatgatggactcttttgtttgt 217  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  6588768 gatgagttgctctacactattgcaaggaaacgtcttcctttgacaagacttgtactcaaatattgttctggccgttattataatggactcttttatttgt 6588867  T
Q  218 tatccaagtgtcataaaggtttccaacatttggatcttgaagataataggtttctgaatgatcaacatgttgtcaaattgtcttcctttcttggtgattt 317  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6588868 tatccatgtgtcataaaagtttccaacatttggatcttgaagataataggtttctgaatgatcaacatgttgtcgaattgtcttcctttcttggtgattt 6588967  T
Q  318 ggtgtccgtaaaccttagtaattgcagtaagatcacagaatcagctttgtttgcacttgctaggaagtgtcctttacttggtgagatcacaatggaaaat 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6588968 ggtgtccgtaaaccttagtaattgcagtaagatcacagaatcagctttgtttgcacttgctaggaagtgtcctttacttggtgagatcacaatggaaaat 6589067  T
Q  418 attaggggtagtgtagcaaattatgaat 445  Q
    ||||||||||||||||||||||||||||    
T  6589068 attaggggtagtgtagcaaattatgaat 6589095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 194 - 333
Target Start/End: Complemental strand, 6397268 - 6397130
Alignment:
Q  194 attatgatggactcttttgtttgttatccaagtgtcataaaggtttccaacatttggatcttgaagataataggtttctgaatgatcaacatgttgtcaa 293  Q
    ||||| ||||||| || |||||||||||||| ||| ||||||||||| | |||||||| |||||| ||| |||||||||||||||||||||| ||| | |    
T  6397268 attataatggactattatgtttgttatccaaatgttataaaggtttctagcatttggaacttgaacatagtaggtttctgaatgatcaacat-ttgccca 6397170  T
Q  294 attgtcttcctttcttggtgatttggtgtccgtaaacctt 333  Q
     ||||||||  |||||||| |||||| ||| |||||||||    
T  6397169 gttgtcttcgattcttggtaatttggcgtcagtaaacctt 6397130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 267 - 414
Target Start/End: Complemental strand, 6416477 - 6416330
Alignment:
Q  267 gtttctgaatgatcaacatgttgtcaaattgtcttcctttcttggtgatttggtgtccgtaaaccttagtaattgcagtaagatcacagaatcagctttg 366  Q
    |||||| |||||||||||||||||| |||||||| | |||||| ||| |||| ||||| |||||||||||  ||||  |||| ||||| |||  ||||||    
T  6416477 gtttcttaatgatcaacatgttgtccaattgtctccgtttcttagtggtttgatgtccataaaccttagttgttgccttaagctcacaaaatatgctttg 6416378  T
Q  367 tttgcacttgctaggaagtgtcctttacttggtgagatcacaatggaa 414  Q
    | ||||||  |||| || |||||| ||||| | ||||||| |||||||    
T  6416377 tatgcactcactagaaactgtcctctacttagcgagatcaaaatggaa 6416330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 413
Target Start/End: Original strand, 6594189 - 6594334
Alignment:
Q  268 tttctgaatgatcaacatgttgtcaaattgtcttcctttcttggtgatttggtgtccgtaaaccttagtaattgcagtaagatcacagaatcagctttgt 367  Q
    |||||||||||||||||||||| | | |||||||  ||||||| || ||||  |||| | |||||||||  |||||   |  ||||||||||||||||||    
T  6594189 tttctgaatgatcaacatgttgccgagttgtctttgtttcttgctggtttgaagtccattaaccttagttcttgcaaccatctcacagaatcagctttgt 6594288  T
Q  368 ttgcacttgctaggaagtgtcctttacttggtgagatcacaatgga 413  Q
    || |||||| ||| |  |||||||||||| |||| |||| ||||||    
T  6594289 tttcacttgttagaagttgtcctttacttagtgatatcaaaatgga 6594334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 336
Target Start/End: Original strand, 8913659 - 8913723
Alignment:
Q  272 tgaatgatcaacatgttgtcaaattgtcttcctttcttggtgatttggtgtccgtaaaccttagt 336  Q
    |||||||||||||||||||||| |||||||  ||||||||| ||||||||||  |||||||||||    
T  8913659 tgaatgatcaacatgttgtcaagttgtctttgtttcttggtaatttggtgtctataaaccttagt 8913723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 414
Target Start/End: Original strand, 7993768 - 7993914
Alignment:
Q  268 tttctgaatgatcaacatgttgtcaaattgtcttcctttcttggtgatttggtgtccgtaaaccttagtaattgcagtaagatcacagaatcagctttgt 367  Q
    ||||||||||||| ||||||||   | ||||| |   |||||||||||||||||||  ||||||||||| | ||  | | | ||||||||||||| ||||    
T  7993768 tttctgaatgatctacatgttgctgagttgtcattacttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgt 7993867  T
Q  368 ttgcacttgctaggaagtgtcctttacttggtgagatcacaatggaa 414  Q
    || |||| | ||| || ||||| | |||| |||| |||| |||||||    
T  7993868 tttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 7993914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 6432664 - 6432591
Alignment:
Q  268 tttctgaatgatcaacatgttgtcaaattgtcttcctttcttggtgatttggtgtccgtaaaccttagtaattg 341  Q
    ||||| |||||||||||||||| |   | |||||  ||||||| ||||||||||||  ||||||||||||||||    
T  6432664 tttctaaatgatcaacatgttgccgggtcgtctttgtttcttgctgatttggtgtctataaaccttagtaattg 6432591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 4e-73; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 44 - 414
Target Start/End: Complemental strand, 28532448 - 28532075
Alignment:
Q  44 cttcacatttaattgactcattggtgagtttgaagagtttgacttgtcttggtttgtctgctttgaatatctccgatgagtttctctacactattgcaag 143  Q
    |||||||| | |||||||||||||||||||| ||| ||||||||||||||||||||| |  ||| ||||| || |||||||| |||||||||||||||||    
T  28532448 cttcacatattattgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttgctctacactattgcaag 28532349  T
Q  144 taaacgtcttcctttgacaagacttgtactcaaatattgttctggccgttattatgatggactcttttgtttgttatccaagtgtca---taaaggtttc 240  Q
       | |||||||||||| ||  ||||| || ||| || | |  |||  |  |||||| ||||||||||||||||||||||||||||    | ||||||||    
T  28532348 gggaggtcttcctttgataaagcttgtcctaaaaaatcgctggggctatagttatgacggactcttttgtttgttatccaagtgtcgacgtcaaggtttc 28532249  T
Q  241 caacatttggatcttgaagataataggtttctgaatgatcaacatgttgtcaaattgtcttcctttcttggtgatttggtgtccgtaaaccttagtaatt 340  Q
    | ||||||| || ||| |  || || |||||||||||||||||||||| || | |||||||| ||||||||||||||| ||||| | |||||||||||||    
T  28532248 cgacatttgtatattggacttagtaagtttctgaatgatcaacatgttatccagttgtcttcgtttcttggtgatttgatgtccatcaaccttagtaatt 28532149  T
Q  341 gcagtaagatcacagaatcagctttgtttgcacttgctaggaagtgtcctttacttggtgagatcacaatggaa 414  Q
    |   |||| | ||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  28532148 gtgataagctaacagaatcatctttgtttgcactcgctaggaactgtcctttacttggtgagatcacaatggaa 28532075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 41888933 - 41888992
Alignment:
Q  64 ttggtgagtttgaagagtttgacttgtcttggtttgtctgctttgaatatctccgatgag 123  Q
    |||||||||||||||   ||||||||||||| ||||| | ||||||||||||||||||||    
T  41888933 ttggtgagtttgaagtacttgacttgtcttgatttgttttctttgaatatctccgatgag 41888992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 320
Target Start/End: Original strand, 41889108 - 41889189
Alignment:
Q  239 tccaacatttggatcttgaagataataggtttctgaatgatcaacatgttgtcaaattgtcttcctttcttggtgatttggt 320  Q
    |||||| |||||||||| || ||| |   ||||||||| || ||||||||||  | |||||||| |||||||||||||||||    
T  41889108 tccaacttttggatcttcaaaatattgtttttctgaatcataaacatgttgtggagttgtcttcatttcttggtgatttggt 41889189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 29021429 - 29021373
Alignment:
Q  44 cttcacatttaattgactcattggtgagtttgaagagtttgacttgtcttggtttgt 100  Q
    |||||||||| |||||||  ||||||||||| ||| |||| |||||||||| |||||    
T  29021429 cttcacatttcattgacttgttggtgagtttcaagggtttaacttgtcttgatttgt 29021373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 41 - 420
Target Start/End: Original strand, 21833746 - 21834122
Alignment:
Q  41 ctgcttcacatttaattgactcattggtgagtttgaagagtttgacttgtcttggtttgtctgctttgaatatctccgatgagtttctctacactattgc 140  Q
    |||||||| |||| |||| |||||| |||||||||||| |||||||||||||| |||||  | ||||| ||||||  |||||||| |||||| |||||||    
T  21833746 ctgcttcatattttattggctcattagtgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatcttggatgagttactctactctattgc 21833845  T
Q  141 aagtaaacgtcttcctttgacaagacttgtactcaaatattgttctggccgttattatgatggactcttttgtttgttatccaagtgtcataaaggtttc 240  Q
    |||  || |||||||||| || || ||||| ||   | | ||  | |||  |  |||||||||| |||||||||||||||||||  |||||   ||| ||    
T  21833846 aagggaaggtcttcctttaacgaggcttgtccttcgaaaatgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcat---ggtgtc 21833942  T
Q  241 caacatttggatcttgaagataataggtttctgaatgatcaacatgttgtcaaattgtcttcctttcttggtgatttggtgtccgtaaaccttagtaatt 340  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||| | |||| ||| ||||||||||||||| | ||| |||||||||||  ||    
T  21833943 caacatttggatcttgaagataacatgtttctgaatgatcaacatgttgtccagttgtattcatttcttggtgatttgatttccataaaccttagtggtt 21834042  T
Q  341 gcagtaagatcacagaatcagctttgtttgcacttgctaggaagtgtcctttacttggtgagatcacaatggaaaatatt 420  Q
    |   |||| |||| |||   ||||||||| |||||| || ||| |||| ||  ||| ||||||||| ||||||| |||||    
T  21834043 gtgataagctcactgaacgtgctttgtttacacttgttaagaactgtcattcgcttagtgagatcaaaatggaacatatt 21834122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 268 - 415
Target Start/End: Original strand, 53761371 - 53761518
Alignment:
Q  268 tttctgaatgatcaacatgttgtcaaattgtcttcctttcttggtgatttggtgtccgtaaaccttagtaattgcagtaagatcacagaatcagctttgt 367  Q
    ||||||||  ||||||||||||| || |||||||   |||||||||||||||||||| |||||||||||  |||   |||||||||| |||  || ||||    
T  53761371 tttctgaacaatcaacatgttgtaaatttgtctttgcttcttggtgatttggtgtccataaaccttagtcgttgttataagatcacaaaattggccttgt 53761470  T
Q  368 ttgcacttgctaggaagtgtcctttacttggtgagatcacaatggaaa 415  Q
    ||||||||||||  || ||||||| |||| ||||||||| ||||||||    
T  53761471 ttgcacttgctaaaaactgtccttcacttagtgagatcaaaatggaaa 53761518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 299 - 405
Target Start/End: Complemental strand, 1600886 - 1600780
Alignment:
Q  299 cttcctttcttggtgatttggtgtccgtaaaccttagtaattgcagtaagatcacagaatcagctttgtttgcacttgctaggaagtgtcctttacttgg 398  Q
    |||| ||||||||||||||||| ||  ||||||||||| | || |||| | ||||||||||||| |||||||||||   |  ||||||||||||||||      
T  1600886 cttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactcaatgagaagtgtcctttacttaa 1600787  T
Q  399 tgagatc 405  Q
    |||||||    
T  1600786 tgagatc 1600780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 1601133 - 1601088
Alignment:
Q  49 catttaattgactcattggtgagtttgaagagtttgacttgtcttg 94  Q
    ||||| ||| |||||||||||||||||||| |||||||||||||||    
T  1601133 catttcattcactcattggtgagtttgaagggtttgacttgtcttg 1601088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 414
Target Start/End: Original strand, 55908338 - 55908457
Alignment:
Q  295 ttgtcttcctttcttggtgatttggtgtccgtaaaccttagtaattgcagtaagatcacagaatcagctttgtttgcacttgctaggaagtgtcctttac 394  Q
    |||||||  ||||||||||||||||||||  ||||||||||| | || || | | ||||||| || ||  |||||||||| | |||||| ||||||| ||    
T  55908338 ttgtctttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgcactcgttaggaattgtccttcac 55908437  T
Q  395 ttggtgagatcacaatggaa 414  Q
    ||  |||| ||| |||||||    
T  55908438 ttattgaggtcaaaatggaa 55908457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 170
Target Start/End: Complemental strand, 641629 - 641537
Alignment:
Q  78 gagtttgacttgtcttggtttgtctgctttgaatatctccgatgagtttctctacactattgcaagtaaacgtcttcctttgacaagacttgt 170  Q
    ||||||||||| ||| | |||| || |||  ||||| ||| |||||||||||| | |||||||||  ||| | ||||||||||| ||||||||    
T  641629 gagtttgacttctctcgatttgacttcttcaaatatatccaatgagtttctctcctctattgcaatgaaaggccttcctttgacgagacttgt 641537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 195 - 414
Target Start/End: Complemental strand, 10615170 - 10614957
Alignment:
Q  195 ttatgatggactcttttgtttgttatccaagtgtcataaaggtttccaacatttggatcttgaagataataggtttctgaatgatcaacatgttgtcaaa 294  Q
    ||||| |||| ||| |||||| ||||||||||||||   ||| |||||||||||||||||||||  |     ||||||||||||||||||||||||| ||    
T  10615170 ttatgctggaatctattgtttattatccaagtgtca---aggcttccaacatttggatcttgaacttcc---gtttctgaatgatcaacatgttgtccaa 10615077  T
Q  295 ttgtcttcctttcttggtgatttggtgtccgtaaaccttagtaattgcagtaagatcacagaatcagctttgtttgcacttgctaggaagtgtcctttac 394  Q
    |||||||| ||||||||||||||| ||||| |||||||||||  |||   |||| ||||| ||| | |||||| ||||||  ||| ||| |||||| |||    
T  10615076 ttgtcttcatttcttggtgatttgatgtccataaaccttagttgttgtgttaagctcacaaaattatctttgtatgcactcactaagaactgtcctctac 10614977  T
Q  395 ttggtgagatcacaatggaa 414  Q
    ||||||| |||| |||||||    
T  10614976 ttggtgaaatcaaaatggaa 10614957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 10615324 - 10615269
Alignment:
Q  44 cttcacatttaattgactcattggtgagtttgaagagtttgacttgtcttggtttg 99  Q
    |||||||||| |||||||||||||||||||||||| | ||||||||||||| ||||    
T  10615324 cttcacattttattgactcattggtgagtttgaagggcttgacttgtcttgatttg 10615269  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 419
Target Start/End: Original strand, 10169762 - 10169873
Alignment:
Q  308 ttggtgatttggtgtccgtaaaccttagtaattgcagtaagatcacagaatcagctttgtttgcacttgctaggaagtgtcctttacttggtgagatcac 407  Q
    |||||||||| ||||| |||||||||||| | ||     |||||||| | ||| | ||||||||||| | |||||| ||||||| |||| |||||||||     
T  10169762 ttggtgatttagtgtctgtaaaccttagtcaatgtttggagatcacatattcatccttgtttgcactcgttaggaattgtccttcacttagtgagatcaa 10169861  T
Q  408 aatggaaaatat 419  Q
    ||||||||||||    
T  10169862 aatggaaaatat 10169873  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 419
Target Start/End: Original strand, 10177287 - 10177398
Alignment:
Q  308 ttggtgatttggtgtccgtaaaccttagtaattgcagtaagatcacagaatcagctttgtttgcacttgctaggaagtgtcctttacttggtgagatcac 407  Q
    |||||||||| ||||| |||||||||||| | ||     |||||||| | ||| | ||||||||||| | |||||| ||||||| |||| |||||||||     
T  10177287 ttggtgatttagtgtctgtaaaccttagtcaatgtttggagatcacatattcatccttgtttgcactcgttaggaattgtccttcacttagtgagatcaa 10177386  T
Q  408 aatggaaaatat 419  Q
    ||||||||||||    
T  10177387 aatggaaaatat 10177398  T

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Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 48 - 416
Target Start/End: Original strand, 51763815 - 51764180
Alignment:
Q  48 acatttaattgactcattggtgagtttgaagagtttgacttgtcttggtttgtctgctttgaatatctccgatgagtttctctacactattgcaagtaaa 147  Q
    |||||| ||||| || ||||||||||||||| ||||||||| ||||| ||||     |||||| ||||| |||||||| |||||| | ||||||||  ||    
T  51763815 acattttattgattcgttggtgagtttgaagggtttgacttctcttgatttgaagcgtttgaaaatctctgatgagttgctctactcgattgcaagggaa 51763914  T
Q  148 cgtcttcctttgacaagacttgtact-caaatattgttctggccgttattatgatggactcttttgtttgttatccaagtgtcataaaggtttccaacat 246  Q
     |||||| ||||| ||| ||||| || ||||| |||  | |||  |  ||||| |||| || |||||||| ||||||| |||||   | ||||  |||||    
T  51763915 ggtcttcttttgaaaaggcttgtccttcaaat-ttgcacgggctatagttatgctggaatcatttgtttggtatccaactgtca---acgtttgaaacat 51764010  T
Q  247 ttggatcttgaagataataggtttctgaatgatcaacatgttgtcaaattgtcttcctttcttggtgatttggtgtccgtaaaccttagtaattgcagta 346  Q
    ||||||||| |||||  | | ||||||||||||  ||||||||| || |||||||  |||||| || ||||||||||| |||||||||||  |||   ||    
T  51764011 ttggatcttcaagatgctggttttctgaatgatatacatgttgtaaatttgtctttgtttcttagtaatttggtgtccataaaccttagtggttgtccta 51764110  T
Q  347 agatcacagaatcagctttgtttgcacttgctaggaagtgtcctttacttggtgagatcacaatggaaaa 416  Q
    || ||||  ||||||| ||| || | ||||||||| | ||||||| |||||||||||||| |||||||||    
T  51764111 agctcaccaaatcagccttgcttactcttgctaggtattgtccttcacttggtgagatcaaaatggaaaa 51764180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 267 - 414
Target Start/End: Original strand, 13470320 - 13470467
Alignment:
Q  267 gtttctgaatgatcaacatgttgtcaaattgtcttcctttcttggtgatttggtgtccgtaaaccttagtaattgcagtaagatcacagaatcagctttg 366  Q
    |||||||||||||||||||||| || |||||||||| |||||| ||| |||| ||||| |||||||||||  |||   |||| ||||| ||| |||||||    
T  13470320 gtttctgaatgatcaacatgttctccaattgtcttcgtttcttagtggtttgatgtccataaaccttagttgttgtcttaagctcacaaaattagctttg 13470419  T
Q  367 tttgcacttgctaggaagtgtcctttacttggtgagatcacaatggaa 414  Q
    | ||||||  |||| || |||||| ||||| ||||||||| |||||||    
T  13470420 tatgcactcactagaaactgtcctctacttagtgagatcaaaatggaa 13470467  T

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Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 44 - 420
Target Start/End: Original strand, 19467870 - 19468243
Alignment:
Q  44 cttcacatttaattgactcattggtgagtttgaagagtttgacttgtcttggtttgtctgctttgaatatctccgatgagtttctctacactattgcaag 143  Q
    |||| ||||| |||||||||||| ||||||||||| ||||||||| ||||  || ||    | |||||||||| |||||  | |||||| |||||||| |    
T  19467870 cttcgcattttattgactcattgctgagtttgaagggtttgacttctcttacttggtggtttctgaatatctctgatgaaatgctctactctattgcacg 19467969  T
Q  144 taaacgtcttcctttgacaagacttgtactcaaatattgttctggccgttattatgatggactcttttgtttgttatccaagtgtcataaaggtttccaa 243  Q
      || | || |||||||| || ||||| ||||||||||| | ||||| |   |||| |||| ||||||||||||||||||||||   |  |||||| |||    
T  19467970 ggaagggctacctttgacgaggcttgtcctcaaatattgctttggccatagctatgctggaatcttttgtttgttatccaagtg---tgcaggtttgcaa 19468066  T
Q  244 catttggatcttgaagataataggtttctgaatgatcaacatgttgtcaaattgtcttcctttcttggtgatttggtgtccgtaaaccttagtaattgca 343  Q
    |||||||||||| ||  |  | ||||| ||||||||||  ||||||  || |||||||  |||||||||||||| |||||  ||||||||||| | || |    
T  19468067 catttggatcttcaacgtgctgggtttttgaatgatcactatgttgataagttgtctttgtttcttggtgatttagtgtctataaaccttagtgaatgta 19468166  T
Q  344 gtaagatcacagaatcagctttgtttgcacttgctaggaagtgtcctttacttggtgagatcacaatggaaaatatt 420  Q
       |  ||||| | ||| | |||||| |||| | |||||| ||||||| |||| ||||||||| |||||||||||||    
T  19468167 tggacctcacatattcaaccttgtttacactcgttaggaattgtccttcacttagtgagatcaaaatggaaaatatt 19468243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 414
Target Start/End: Original strand, 1037274 - 1037393
Alignment:
Q  295 ttgtcttcctttcttggtgatttggtgtccgtaaaccttagtaattgcagtaagatcacagaatcagctttgtttgcacttgctaggaagtgtcctttac 394  Q
    |||||||  ||||||||||||||||||||  ||||||||||| | || || | | ||||||| || ||  |||||||||| | |||||| ||||||| ||    
T  1037274 ttgtctttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgcactcgttaggaattgtccttcac 1037373  T
Q  395 ttggtgagatcacaatggaa 414  Q
    ||  |||| ||| |||||||    
T  1037374 ttattgaggtcaaaatggaa 1037393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 341
Target Start/End: Original strand, 17627669 - 17627715
Alignment:
Q  295 ttgtcttcctttcttggtgatttggtgtccgtaaaccttagtaattg 341  Q
    |||||||| ||||||||| |||||||||| |||||||||||| ||||    
T  17627669 ttgtcttcatttcttggtaatttggtgtctgtaaaccttagttattg 17627715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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