View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14435_low_30 (Length: 445)

Name: NF14435_low_30
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14435_low_30
NF14435_low_30
[»] chr7 (8 HSPs)
chr7 (137-191)||(18867889-18867943)
chr7 (137-190)||(32279246-32279299)
chr7 (137-191)||(2628387-2628441)
chr7 (137-191)||(34328180-34328234)
chr7 (137-191)||(46425279-46425333)
chr7 (16-76)||(9488836-9488897)
chr7 (38-76)||(32279358-32279396)
chr7 (16-74)||(37685256-37685314)
[»] chr5 (3 HSPs)
chr5 (137-191)||(37480357-37480411)
chr5 (137-189)||(2651699-2651751)
chr5 (137-189)||(14151895-14151947)
[»] chr4 (3 HSPs)
chr4 (137-191)||(52673149-52673203)
chr4 (137-190)||(29544114-29544167)
chr4 (137-190)||(46079292-46079345)
[»] chr1 (13 HSPs)
chr1 (137-191)||(51748627-51748681)
chr1 (19-76)||(26478529-26478587)
chr1 (137-174)||(27907778-27907815)
chr1 (137-190)||(48843451-48843504)
chr1 (137-168)||(19456284-19456315)
chr1 (33-76)||(19456376-19456419)
chr1 (137-191)||(48915128-48915182)
chr1 (137-191)||(50539679-50539733)
chr1 (35-76)||(27032365-27032406)
chr1 (35-76)||(27907687-27907728)
chr1 (16-76)||(48843340-48843401)
chr1 (16-76)||(50539794-50539855)
chr1 (17-49)||(19456268-19456300)
[»] chr3 (6 HSPs)
chr3 (16-76)||(10688572-10688633)
chr3 (137-191)||(4037216-4037270)
chr3 (137-190)||(50700098-50700151)
chr3 (147-191)||(39994276-39994320)
chr3 (137-174)||(34272421-34272458)
chr3 (35-76)||(49279473-49279514)
[»] chr2 (7 HSPs)
chr2 (16-76)||(31750428-31750489)
chr2 (137-191)||(15141955-15142009)
chr2 (35-76)||(23395917-23395958)
chr2 (37-76)||(11226132-11226171)
chr2 (137-191)||(41069624-41069678)
chr2 (137-189)||(19037010-19037062)
chr2 (18-73)||(36562809-36562865)
[»] chr6 (2 HSPs)
chr6 (137-191)||(9928336-9928390)
chr6 (137-191)||(22469774-22469828)
[»] scaffold0176 (1 HSPs)
scaffold0176 (19-76)||(15058-15116)
[»] chr8 (4 HSPs)
chr8 (137-191)||(4834921-4834975)
chr8 (137-191)||(16467674-16467728)
chr8 (137-189)||(16499773-16499825)
chr8 (137-189)||(33938556-33938608)


Alignment Details
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 18867943 - 18867889
Alignment:
Q  137 aaaatgaatctatgtcaccaatgacaccaaaaaactataacatccaagtatttcc 191  Q
    |||||||| |||||||||||||||||| ||||||||||  |||||||||||||||    
T  18867943 aaaatgaacctatgtcaccaatgacacaaaaaaactatggcatccaagtatttcc 18867889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 32279299 - 32279246
Alignment:
Q  137 aaaatgaatctatgtcaccaatgacaccaaaaaactataacatccaagtatttc 190  Q
    |||||||| |||||||||| |||||||||||||||||| |||||||| ||||||    
T  32279299 aaaatgaacctatgtcaccgatgacaccaaaaaactatgacatccaaatatttc 32279246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 2628441 - 2628387
Alignment:
Q  137 aaaatgaatctatgtcaccaatgacaccaaaaaactataacatccaagtatttcc 191  Q
    ||||||||  ||||||||||||| ||||||||||||||  |||||||||||||||    
T  2628441 aaaatgaacttatgtcaccaatggcaccaaaaaactatggcatccaagtatttcc 2628387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 34328180 - 34328234
Alignment:
Q  137 aaaatgaatctatgtcaccaatgacaccaaaaaactataacatccaagtatttcc 191  Q
    |||||||| |||||||||||||| ||||||||||||||  || ||||||||||||    
T  34328180 aaaatgaacctatgtcaccaatggcaccaaaaaactatggcacccaagtatttcc 34328234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 46425333 - 46425279
Alignment:
Q  137 aaaatgaatctatgtcaccaatgacaccaaaaaactataacatccaagtatttcc 191  Q
    |||||||| |||||||||||||| ||||||||||||||  || ||||||||||||    
T  46425333 aaaatgaacctatgtcaccaatggcaccaaaaaactatggcacccaagtatttcc 46425279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 9488897 - 9488836
Alignment:
Q  16 cacttgggtgccatagg-ttttggtgtcattggtgcctttgtgtctatctctctcttaacaa 76  Q
    |||||||||||||| || |||||||| ||||| | ||||||||| |||||||||||||||||    
T  9488897 cacttgggtgccattggcttttggtgccattgatacctttgtgtatatctctctcttaacaa 9488836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 32279396 - 32279358
Alignment:
Q  38 gtgtcattggtgcctttgtgtctatctctctcttaacaa 76  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  32279396 gtgtcattggtatctttgtgtctatctctctcttaacaa 32279358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 37685314 - 37685256
Alignment:
Q  16 cacttgggtgccataggttttggtgtcattggtgcctttgtgtctatctctctcttaac 74  Q
    |||||||||||| | |  ||||||| |||||||||||||||  ||||||||||||||||    
T  37685314 cacttgggtgcctttgcctttggtgccattggtgcctttgttcctatctctctcttaac 37685256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 37480357 - 37480411
Alignment:
Q  137 aaaatgaatctatgtcaccaatgacaccaaaaaactataacatccaagtatttcc 191  Q
    ||||||||  ||||||||||||||||||||||||||||| || ||||||||||||    
T  37480357 aaaatgaacttatgtcaccaatgacaccaaaaaactatagcacccaagtatttcc 37480411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 2651699 - 2651751
Alignment:
Q  137 aaaatgaatctatgtcaccaatgacaccaaaaaactataacatccaagtattt 189  Q
    ||||||||  ||||||||||||| ||||||||||||||  || ||||||||||    
T  2651699 aaaatgaacttatgtcaccaatggcaccaaaaaactatggcacccaagtattt 2651751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 14151947 - 14151895
Alignment:
Q  137 aaaatgaatctatgtcaccaatgacaccaaaaaactataacatccaagtattt 189  Q
    |||||||| |||||||| |||||||| ||||||||||| | | ||||||||||    
T  14151947 aaaatgaacctatgtcatcaatgacatcaaaaaactatgatacccaagtattt 14151895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 52673203 - 52673149
Alignment:
Q  137 aaaatgaatctatgtcaccaatgacaccaaaaaactataacatccaagtatttcc 191  Q
    |||||||| |||||||||||||||||||||||||||||  || ||||||||||||    
T  52673203 aaaatgaacctatgtcaccaatgacaccaaaaaactatggcacccaagtatttcc 52673149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 29544167 - 29544114
Alignment:
Q  137 aaaatgaatctatgtcaccaatgacaccaaaaaactataacatccaagtatttc 190  Q
    ||||||||  ||||||||||||| |||||||||||||| ||| |||||||||||    
T  29544167 aaaatgaacatatgtcaccaatggcaccaaaaaactatgacacccaagtatttc 29544114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 46079345 - 46079292
Alignment:
Q  137 aaaatgaatctatgtcaccaatgacaccaaaaaactataacatccaagtatttc 190  Q
    |||||||| |||||||| ||||| ||||||||||||||  ||||||||||||||    
T  46079345 aaaatgaacctatgtcatcaatggcaccaaaaaactatgtcatccaagtatttc 46079292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 51748627 - 51748681
Alignment:
Q  137 aaaatgaatctatgtcaccaatgacaccaaaaaactataacatccaagtatttcc 191  Q
    ||||||||||||||||| ||||| ||||||||||||||  |||||||||||||||    
T  51748627 aaaatgaatctatgtcatcaatggcaccaaaaaactatggcatccaagtatttcc 51748681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 26478529 - 26478587
Alignment:
Q  19 ttgggtgccat-aggttttggtgtcattggtgcctttgtgtctatctctctcttaacaa 76  Q
    ||||||||||| || |||||||||||||||| ||||||||||||||| ||| |||||||    
T  26478529 ttgggtgccattagtttttggtgtcattggtacctttgtgtctatctttcttttaacaa 26478587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 27907778 - 27907815
Alignment:
Q  137 aaaatgaatctatgtcaccaatgacaccaaaaaactat 174  Q
    |||||||| |||||||||||||||||||||||||||||    
T  27907778 aaaatgaacctatgtcaccaatgacaccaaaaaactat 27907815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 48843451 - 48843504
Alignment:
Q  137 aaaatgaatctatgtcaccaatgacaccaaaaaactataacatccaagtatttc 190  Q
    |||||||| |||||||||||||| ||||||||||||||  || |||||||||||    
T  48843451 aaaatgaacctatgtcaccaatggcaccaaaaaactatggcacccaagtatttc 48843504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Complemental strand, 19456315 - 19456284
Alignment:
Q  137 aaaatgaatctatgtcaccaatgacaccaaaa 168  Q
    ||||||||||||||||||||||||||||||||    
T  19456315 aaaatgaatctatgtcaccaatgacaccaaaa 19456284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 19456419 - 19456376
Alignment:
Q  33 ttttggtgtcattggtgcctttgtgtctatctctctcttaacaa 76  Q
    |||||||||||||||  ||||||||||||||||| |||||||||    
T  19456419 ttttggtgtcattggcacctttgtgtctatctctttcttaacaa 19456376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 48915182 - 48915128
Alignment:
Q  137 aaaatgaatctatgtcaccaatgacaccaaaaaactataacatccaagtatttcc 191  Q
    |||||||| |||||||||||||| ||| ||||||||||  || ||||||||||||    
T  48915182 aaaatgaacctatgtcaccaatgtcacaaaaaaactatggcacccaagtatttcc 48915128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 50539733 - 50539679
Alignment:
Q  137 aaaatgaatctatgtcaccaatgacaccaaaaaactataacatccaagtatttcc 191  Q
    ||||||||  |||||||||||||||||||| |||||||  || ||||||||||||    
T  50539733 aaaatgaacttatgtcaccaatgacaccaataaactatggcacccaagtatttcc 50539679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 27032406 - 27032365
Alignment:
Q  35 ttggtgtcattggtgcctttgtgtctatctctctcttaacaa 76  Q
    |||||||||| |||  ||||||||||||||||||||||||||    
T  27032406 ttggtgtcatgggtaactttgtgtctatctctctcttaacaa 27032365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 27907687 - 27907728
Alignment:
Q  35 ttggtgtcattggtgcctttgtgtctatctctctcttaacaa 76  Q
    |||||||||| |||  ||||||||||||||||||||||||||    
T  27907687 ttggtgtcataggtaactttgtgtctatctctctcttaacaa 27907728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 48843340 - 48843401
Alignment:
Q  16 cacttgggtgccataggttttgg-tgtcattggtgcctttgtgtctatctctctcttaacaa 76  Q
    |||||||||||||||| |||| | |||||| |||  |||||| |||||||||||||||||||    
T  48843340 cacttgggtgccatagttttttgatgtcataggtaactttgtatctatctctctcttaacaa 48843401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 50539855 - 50539794
Alignment:
Q  16 cacttgggtgccataggtttt-ggtgtcattggtgcctttgtgtctatctctctcttaacaa 76  Q
    |||| ||||||||||| |||| ||||| ||||   |||||||||||||||||||||||||||    
T  50539855 cactcgggtgccatagttttttggtgttattgacacctttgtgtctatctctctcttaacaa 50539794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 19456268 - 19456300
Alignment:
Q  17 acttgggtgccataggttttggtgtcattggtg 49  Q
    ||||||||||||||| |||||||||||||||||    
T  19456268 acttgggtgccatagcttttggtgtcattggtg 19456300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 10688572 - 10688633
Alignment:
Q  16 cacttgggtgccatagg-ttttggtgtcattggtgcctttgtgtctatctctctcttaacaa 76  Q
    |||||||||| ||| || |||||||| ||||||| |||||||||||||||||||||||||||    
T  10688572 cacttgggtgtcattggcttttggtgccattggtacctttgtgtctatctctctcttaacaa 10688633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 4037216 - 4037270
Alignment:
Q  137 aaaatgaatctatgtcaccaatgacaccaaaaaactataacatccaagtatttcc 191  Q
    |||||||| |||||||||||||| ||||||||||||||  || ||||||||||||    
T  4037216 aaaatgaacctatgtcaccaatggcaccaaaaaactatggcacccaagtatttcc 4037270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 50700098 - 50700151
Alignment:
Q  137 aaaatgaatctatgtcaccaatgacaccaaaaaactataacatccaagtatttc 190  Q
    ||||||||  ||||||||||||| ||| ||||||||||| ||||||||||||||    
T  50700098 aaaatgaacttatgtcaccaatggcactaaaaaactatagcatccaagtatttc 50700151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 39994276 - 39994320
Alignment:
Q  147 tatgtcaccaatgacaccaaaaaactataacatccaagtatttcc 191  Q
    ||||||||||||||||||||||||||||  || ||||||||||||    
T  39994276 tatgtcaccaatgacaccaaaaaactatggcacccaagtatttcc 39994320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 34272458 - 34272421
Alignment:
Q  137 aaaatgaatctatgtcaccaatgacaccaaaaaactat 174  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  34272458 aaaatgaacctatgtcaccaataacaccaaaaaactat 34272421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 49279473 - 49279514
Alignment:
Q  35 ttggtgtcattggtgcctttgtgtctatctctctcttaacaa 76  Q
    |||||||||| |||  ||||||||||||||||||||||||||    
T  49279473 ttggtgtcataggtaactttgtgtctatctctctcttaacaa 49279514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 31750428 - 31750489
Alignment:
Q  16 cacttgggtgccatagg-ttttggtgtcattggtgcctttgtgtctatctctctcttaacaa 76  Q
    |||||||||||||| || |||||||| ||||| | |||||||||||||||||||||||||||    
T  31750428 cacttgggtgccattggcttttggtgccattgatacctttgtgtctatctctctcttaacaa 31750489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 15141955 - 15142009
Alignment:
Q  137 aaaatgaatctatgtcaccaatgacaccaaaaaactataacatccaagtatttcc 191  Q
    |||||||| ||||||||||||||||| |||||||||||  || ||||||||||||    
T  15141955 aaaatgaacctatgtcaccaatgacatcaaaaaactatggcacccaagtatttcc 15142009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 23395917 - 23395958
Alignment:
Q  35 ttggtgtcattggtgcctttgtgtctatctctctcttaacaa 76  Q
    |||||||||||||| | |||||||||||||||||||||||||    
T  23395917 ttggtgtcattggtacatttgtgtctatctctctcttaacaa 23395958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 11226132 - 11226171
Alignment:
Q  37 ggtgtcattggtgcctttgtgtctatctctctcttaacaa 76  Q
    |||| ||||||| |||||||||||||||||||||||||||    
T  11226132 ggtgccattggtacctttgtgtctatctctctcttaacaa 11226171  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 41069678 - 41069624
Alignment:
Q  137 aaaatgaatctatgtcaccaatgacaccaaaaaactataacatccaagtatttcc 191  Q
    |||||||| |||||||||||||| |||||||||| |||  || ||||||||||||    
T  41069678 aaaatgaacctatgtcaccaatggcaccaaaaaattatggcacccaagtatttcc 41069624  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 19037062 - 19037010
Alignment:
Q  137 aaaatgaatctatgtcaccaatgacaccaaaaaactataacatccaagtattt 189  Q
    |||||||| |||||||||||||| ||| ||||||||||  || ||||||||||    
T  19037062 aaaatgaacctatgtcaccaatggcactaaaaaactatggcacccaagtattt 19037010  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 36562865 - 36562809
Alignment:
Q  18 cttgggtgccatagg-ttttggtgtcattggtgcctttgtgtctatctctctcttaa 73  Q
    |||||||||||| || |||||||||||||||| || ||||  |||||||||||||||    
T  36562865 cttgggtgccattggcttttggtgtcattggtaccattgttcctatctctctcttaa 36562809  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 9928336 - 9928390
Alignment:
Q  137 aaaatgaatctatgtcaccaatgacaccaaaaaactataacatccaagtatttcc 191  Q
    |||||||| |||||||||||||| ||||||||||||||  || ||||||||||||    
T  9928336 aaaatgaacctatgtcaccaatggcaccaaaaaactatggcacccaagtatttcc 9928390  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 22469774 - 22469828
Alignment:
Q  137 aaaatgaatctatgtcaccaatgacaccaaaaaactataacatccaagtatttcc 191  Q
    |||||||| |||||||||||||| ||||||||||||||  || || |||||||||    
T  22469774 aaaatgaacctatgtcaccaatggcaccaaaaaactatggcacccgagtatttcc 22469828  T

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Target: scaffold0176 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 15058 - 15116
Alignment:
Q  19 ttgggtgccataggtttt-ggtgtcattggtgcctttgtgtctatctctctcttaacaa 76  Q
    ||||||||||||| |||| |||||||| |||  |||||||||||||||| |||||||||    
T  15058 ttgggtgccatagttttttggtgtcataggtaactttgtgtctatctctatcttaacaa 15116  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 4834975 - 4834921
Alignment:
Q  137 aaaatgaatctatgtcaccaatgacaccaaaaaactataacatccaagtatttcc 191  Q
    |||||||| |||||||||||||  ||||||||||||||  || ||||||||||||    
T  4834975 aaaatgaacctatgtcaccaatatcaccaaaaaactatggcacccaagtatttcc 4834921  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 16467674 - 16467728
Alignment:
Q  137 aaaatgaatctatgtcaccaatgacaccaaaaaactataacatccaagtatttcc 191  Q
    |||||||| |||| ||||||||| ||||||||||||||  || ||||||||||||    
T  16467674 aaaatgaacctatatcaccaatgtcaccaaaaaactatcgcacccaagtatttcc 16467728  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 16499825 - 16499773
Alignment:
Q  137 aaaatgaatctatgtcaccaatgacaccaaaaaactataacatccaagtattt 189  Q
    |||||||| |||| ||||||||| ||||||||||||||  || ||||||||||    
T  16499825 aaaatgaacctatatcaccaatgtcaccaaaaaactatggcacccaagtattt 16499773  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 33938608 - 33938556
Alignment:
Q  137 aaaatgaatctatgtcaccaatgacaccaaaaaactataacatccaagtattt 189  Q
    |||||||| |||||||| ||||| ||||||||||||||  || ||||||||||    
T  33938608 aaaatgaacctatgtcatcaatggcaccaaaaaactatggcacccaagtattt 33938556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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