View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14435_low_31 (Length: 443)
Name: NF14435_low_31
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_low_31 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 18 - 443
Target Start/End: Original strand, 11605879 - 11606304
Alignment:
| Q |
18 |
atagcttcaactttggatttgannnnnnnaatatctgaagctattctgtgtctaggtttcatggtcttgatgtcaaaagcaaccttgtgaaaagaagaat |
117 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11605879 |
atagcttcaactttggatttgatttttttaatatctgaagctattctgtgtctaggtttcatggtcttgatgtcaaaagcaaccttgtgaaaagaagaat |
11605978 |
T |
|
| Q |
118 |
ttttgttgttcccttgtcgatgatcgacaaggcgaagattgtattcatctatagcatcttccatatcttgagcaatatctcttacccttttaacccatac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11605979 |
ttttgttgttcccttgtcgatgatcgacaaggcgaagattgtattcatctatagcatcttccatatcttgagcaatatctcttacccttttaacccatac |
11606078 |
T |
|
| Q |
218 |
tttgagttctggatctttgtcttccaatgcatcatctctcgttaagatggcattgtggcgtttgagttcgtctttgatgtattgaacatcttcacggacc |
317 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11606079 |
tttgagttcaggatctttgtcttccaatgcatcatctctcgttaagatggcattgtggcgtttgagttcgtctttgatgtattgaacatcttcacggacc |
11606178 |
T |
|
| Q |
318 |
cctttttgtagaattacttcttcttgaagtaaccaactcagtttgtccaataaaaatgatactgaactatctgccattttcttctctcaactttttactg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11606179 |
cctttttgtagaattacttcttcttgaagtaaccaactcagtttgtccaataaaaatgatactgaactatctgccattttcttctctcaactttttactg |
11606278 |
T |
|
| Q |
418 |
tcttgccttaaatttctaactctctc |
443 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
11606279 |
tcttgccttaaatttctaactctctc |
11606304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 22 - 397
Target Start/End: Complemental strand, 11640178 - 11639806
Alignment:
| Q |
22 |
cttcaactttggatttgannnnnnnaatatctgaagctattctgtgtctaggtttcatggtcttgatgtcaaaagcaaccttgtgaaaagaagaattttt |
121 |
Q |
| |
|
|||||||||||||||||| |||| |||||| ||| || |||||| |||||||||||| || ||||| ||| ||||||| ||||||| ||| |
|
|
| T |
11640178 |
cttcaactttggatttgattccttgtatatttgaagcaattttgcgtctagctttcatggtcttaattccaaaaacaatcttgtgataagaaga---ttt |
11640082 |
T |
|
| Q |
122 |
gttgttcccttgtcgatgatcgacaaggcgaagattgtattcatctatagcatcttccatatcttgagcaatatctcttacccttttaacccatactttg |
221 |
Q |
| |
|
| | || |||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11640081 |
gattttgccttgttgatgatcgacaaggcgaagatagtattcatctatagcatcttccatgtcttgagcaatatctcttactcttttaacccatactttg |
11639982 |
T |
|
| Q |
222 |
agttctggatctttgtcttccaatgcatcatctctcgttaagatggcattgtggcgtttgagttcgtctttgatgtattgaacatcttcacggacccctt |
321 |
Q |
| |
|
||||| || |||||||||||||||| |||| || | | ||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
11639981 |
agttcagggtctttgtcttccaatgaatcagctaacatcaagatggacttgtggcgttcaagttcgtctttgatgtattgaacatcttcacggactcctc |
11639882 |
T |
|
| Q |
322 |
tttgtagaattacttcttcttgaagtaaccaactcagtttgtccaataaaaatgatactgaactatctgccatttt |
397 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| | || |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11639881 |
tttgtagatttacttcctcttgaagtaaccatgttagcttgtccaataaaaatgatactgaactgtctgccatttt |
11639806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 48 - 395
Target Start/End: Complemental strand, 11621661 - 11621317
Alignment:
| Q |
48 |
atatctgaagctattctgtgtctaggtttcatggtcttgatgtcaaaagcaaccttgtgaaaagaagaatttttgttgttcccttgtcgatgatcgacaa |
147 |
Q |
| |
|
|||| |||||||||| ||||||||| |||||||||||| ||| | ||| || |||||||||| |||| | || | || |||||| |||||||||||| |
|
|
| T |
11621661 |
atatttgaagctattttgtgtctagctttcatggtcttaatgccgaaaagaatcttgtgaaaataaga---tctgatttttccttgttgatgatcgacaa |
11621565 |
T |
|
| Q |
148 |
ggcgaagattgtattcatctatagcatcttccatatcttgagcaatatctcttacccttttaacccatactttgagttctggatctttgtcttccaatgc |
247 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||| || ||||||||||||| || |
|
|
| T |
11621564 |
ggcgaagatagtattcatctatagcatcttccatgtcttgagcaataactctaacccttttaacccatactttgagttcagggtctttgtcttccattga |
11621465 |
T |
|
| Q |
248 |
atcatctctcgttaagatggcattgtggcgtttgagttcgtctttgatgtattgaacatcttcacggacccctttttgtagaattacttcttcttgaagt |
347 |
Q |
| |
|
|||| || | | |||||||| |||||||||| ||||||||| |||||||||||||||||||||||||| ||| |||||||| |||| |||||||||||| |
|
|
| T |
11621464 |
atcagctgccatcaagatggccttgtggcgttcgagttcgtcgttgatgtattgaacatcttcacggacgcctctttgtagatttacctcttcttgaagt |
11621365 |
T |
|
| Q |
348 |
aaccaactcagtttgtccaataaaaatgatactgaactatctgccatt |
395 |
Q |
| |
|
|||||| | || || ||||| ||||||||||||||||| ||||||||| |
|
|
| T |
11621364 |
aaccaagttagcttctccaacaaaaatgatactgaactctctgccatt |
11621317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University