View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_low_35 (Length: 417)
Name: NF14435_low_35
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 42210150 - 42209952
Alignment:
| Q |
18 |
aaatatgtgtgtgattgtgtttaatgaatataagttgttaaaacacattgatcatcaaattaattaaccatgattttaaagtgtccaaatatatatgata |
117 |
Q |
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| T |
42210150 |
aaatatgtgtgtgattgtgtttaatgaatataagttgttaaaacacattgatcatcaaattaattaaccatgattttaaagtgtccaaatatatatgata |
42210051 |
T |
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| Q |
118 |
ttactaagtactaccaactaaacatccaaattgtgttcaattatacacaattttttccggtgttcaaatgtatattacatctatatctatatttgtatc |
216 |
Q |
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| T |
42210050 |
ttactaagtactaccaactaaacatccaaattgtgttcaattatacacaattttttccggtgttcaaatgtatattacatctatatctatatttgtatc |
42209952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 216 - 316
Target Start/End: Complemental strand, 42209908 - 42209808
Alignment:
| Q |
216 |
ccatgcacttaaagattagtcacatgattaaaccgtcttaaccttttaaatatatgcagactatttattgtccgtaatagttgactcgtgtagtgacata |
315 |
Q |
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| T |
42209908 |
ccatgcacttaaaaattagtcacatgattaaaccgtcttaaccttttaaatatatgcagaatatttattgtccgtaatagttgactcgtatagtgacata |
42209809 |
T |
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| Q |
316 |
a |
316 |
Q |
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| T |
42209808 |
a |
42209808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 314 - 407
Target Start/End: Complemental strand, 42209764 - 42209671
Alignment:
| Q |
314 |
taaaattgaattataattaaacaagaaaagttaaactaaactaattaccctaaccgtaggaggatccgagtctggaagagttgaatcgcctatg |
407 |
Q |
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| T |
42209764 |
taaaattgaattataattaaacaagaacagttaaactaaactaattaccctaaccgtaggaggatccgagtctggaagagttgaatcgcttatg |
42209671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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