View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_low_4 (Length: 734)
Name: NF14435_low_4
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 245 - 719
Target Start/End: Complemental strand, 33342704 - 33342236
Alignment:
| Q |
245 |
taaccaaaacaaagaaaatcaaaagtataattaatttcttagagcgaggaaattttgtgatttttaatcatttagatgtacgattatttttagaaatgnn |
344 |
Q |
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| T |
33342704 |
taaccaaaacaaagaaaatcaaaagtataattaatttcttagagcgaggaaattttgtgatttttaatcatttagatgtacgattatttttagaaatgaa |
33342605 |
T |
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| Q |
345 |
nnnnntgtatcttccaatattcttcttctccatctttctcactctaatttgtgaagcccccttattcttaattatgttttcaaagtatctctctttaaca |
444 |
Q |
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| T |
33342604 |
aaaaatgtatcttccaatattcttcttctccatctttctcactctaatttgtgaagccc--ttattcttaattatgttttcaaagtatctctctttaaca |
33342507 |
T |
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| Q |
445 |
tcttcggcgtttggaggacatagcattgcaattgagattctttgatgaagtagaagtcaagtcaataataggtgtggtagtgatgaagccaataattaat |
544 |
Q |
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| T |
33342506 |
tcttcggcgtttgcaggacatagcattgcaattgagattatttgatgaagtagaagtcaagtcaataataggtgtggtagtgatgaagccaataattaat |
33342407 |
T |
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| Q |
545 |
aggtgacacttacaacctttcttctttcacaaccccgccccacccacttacttttgtgcttttggatctttactttaataacgaaggtgtttttagattc |
644 |
Q |
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| T |
33342406 |
aggtgacacttacaacctttcttctttcacaac----ccccacccacttacttttgtgcttttggatctttactttaataacgaaggtgtttttagattc |
33342311 |
T |
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| Q |
645 |
caatcttttaaatagtttccaattgaaaaaggccaaagaaaaacaaaattgtccagtataacaaatatgaaatat |
719 |
Q |
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| T |
33342310 |
caatcttttaaatagtttccaattgaaaaaggccaaagaaaaacaaaattgaccagtataacaaatatgaaatat |
33342236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 3 - 193
Target Start/End: Complemental strand, 33342946 - 33342756
Alignment:
| Q |
3 |
ggacatcatcaatcttgacttgttcgttaccattggtcacacactccatgaaggtaatagatgtattgacttcttaacaaatcttggtgattcttcaacc |
102 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33342946 |
ggacatcttcaatcttgacttgttagttaccattggtcacacactccatgaaggtaatagatgtattgacttcttaacaaatcttgatgattcttcaacc |
33342847 |
T |
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| Q |
103 |
tcgaagattttgatctatatatcttctgagtcaaacttatcggacctcctctttgtagattctacataaacttggttccgtagattgtagt |
193 |
Q |
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| T |
33342846 |
tcgaagattttgatctatatattttctcagtcaaacttatcggacctcctctttgtagattcgatataaacttggttccgtagattgtagt |
33342756 |
T |
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