View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_low_40 (Length: 392)
Name: NF14435_low_40
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 28 - 377
Target Start/End: Complemental strand, 5913732 - 5913378
Alignment:
| Q |
28 |
ctatcttttttatgactttttatgttaaaaaacattgtattatcacgtgtcatacttgaattcaattaatgatccatagatgagaaatatggtttatcta |
127 |
Q |
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| T |
5913732 |
ctatctttttcatgactttttatgttaaaaaacattgtattatcacgtgtgacacttgaattcaatcaatgatccatagatgagaaatatggtttatcta |
5913633 |
T |
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| Q |
128 |
tatggtaacattgagtgtaatgtatctcaaagagtacactacatatacagctctccaagtgcatggacgtgatagaatttgatagcatatctaaaggaat |
227 |
Q |
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| T |
5913632 |
tatggtaacattgagtgtaatgtatctcaaagagtacactacatatacagctctccaagtgcatggacgtaatagaatttgatagcatatctaaaggaat |
5913533 |
T |
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| Q |
228 |
cacgtggttcgtgtgtctcggtcctactgcagaatcnnnnnnnctgaaaccatttctagccacaaatccactactaacttttacccatac--tatactac |
325 |
Q |
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| T |
5913532 |
cacgtggttcgtgtgtctcggtcctactgcagaatcaaaaaaactgaaaccatttctagccacaaatcctttactaacttttacccatactatatactac |
5913433 |
T |
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| Q |
326 |
agccacacacatacacatttttggggca---catcacagccacgaacttgttttt |
377 |
Q |
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| T |
5913432 |
agccacacacatacacatttttggggcacatcatcacagccacgaacttgttttt |
5913378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 5920151 - 5920102
Alignment:
| Q |
194 |
acgtgatagaatttgatagcatatctaaaggaatcacgtggttcgtgtgt |
243 |
Q |
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| T |
5920151 |
acgtaatagaatttgataccatatctaaaggaattacgtggttagtgtgt |
5920102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 49583639 - 49583595
Alignment:
| Q |
45 |
ttttatgttaaaaaacattgtattatcacgtgtcatacttgaatt |
89 |
Q |
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||||||||| ||||| ||||||||||||||||||| | ||||||| |
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| T |
49583639 |
ttttatgtttaaaaaaattgtattatcacgtgtcacaattgaatt |
49583595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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