View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_low_43 (Length: 380)
Name: NF14435_low_43
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_low_43 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 371
Target Start/End: Complemental strand, 2311315 - 2310964
Alignment:
| Q |
19 |
gtaatggctcaattgctatggttgacaaataatcttgaaaagatttctcatagaattccacnnnnnnnccttttgcaaatattggttttttcacatggtc |
118 |
Q |
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| T |
2311315 |
gtaatggctcaattgctatggttgacaaataatcttgaaaagatttgtcatagaattccactttttttccttttgaaaatattggttttttcacatggtc |
2311216 |
T |
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| Q |
119 |
ttttaagttcacatcaacttgcttccatcttttatcttcatttttatcttgtacctgttcacacatatttgaacaattctagtc-aggnnnnnnncaata |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || | ||| |
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| T |
2311215 |
ttttaagttcacatcaacttgcttccatcttttatcttcatttttatcttgtacctgttcacacatatttgaacaatgctagtcaagaaaaaaaaccata |
2311116 |
T |
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| Q |
218 |
taaatgatggaatttaatatattttaacaagagtaaaataagatgtgatcgatatttaaaaaactaaaccgaatcgaacatttcaactgtttgaagtgtg |
317 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||| |
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| T |
2311115 |
taaatgatggtgtttaatatattttaacaagagtaaaataagatgtgatcgatatttaaaaaactaaaccgaatcggacatttcaaccgtttgatgtgtg |
2311016 |
T |
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| Q |
318 |
aaccgaaacggtttgtggttcggtttgagcaatatatttagatttcatattctt |
371 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
2311015 |
aaccgaaacggtttgtggttcggtttgagca--atatttagatttcattttctt |
2310964 |
T |
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