View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14435_low_44 (Length: 380)

Name: NF14435_low_44
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14435_low_44
NF14435_low_44
[»] chr8 (3 HSPs)
chr8 (135-368)||(43745697-43745927)
chr8 (216-368)||(43430952-43431098)
chr8 (304-354)||(12529910-12529960)
[»] chr5 (2 HSPs)
chr5 (227-368)||(42554183-42554324)
chr5 (231-368)||(28220916-28221053)
[»] chr1 (3 HSPs)
chr1 (231-366)||(4677538-4677673)
chr1 (242-367)||(34465245-34465370)
chr1 (265-368)||(15596062-15596165)
[»] chr7 (24 HSPs)
chr7 (231-368)||(6790379-6790516)
chr7 (242-366)||(3148351-3148475)
chr7 (231-367)||(17261361-17261497)
chr7 (230-366)||(10492999-10493135)
chr7 (231-367)||(17269069-17269205)
chr7 (266-360)||(8602738-8602832)
chr7 (230-366)||(13332148-13332284)
chr7 (231-366)||(27829343-27829478)
chr7 (266-368)||(8647705-8647807)
chr7 (231-366)||(8668434-8668569)
chr7 (287-368)||(8655374-8655455)
chr7 (231-366)||(8630197-8630332)
chr7 (266-368)||(1302315-1302417)
chr7 (266-368)||(7876830-7876932)
chr7 (275-360)||(8591411-8591496)
chr7 (265-366)||(8610667-8610768)
chr7 (266-366)||(8584534-8584634)
chr7 (266-342)||(8660248-8660324)
chr7 (266-348)||(8104069-8104151)
chr7 (265-351)||(8582666-8582752)
chr7 (266-348)||(8016309-8016391)
chr7 (308-354)||(8546721-8546767)
chr7 (305-357)||(8577332-8577384)
chr7 (265-351)||(8572593-8572679)
[»] chr4 (5 HSPs)
chr4 (231-366)||(9323062-9323197)
chr4 (231-366)||(9377541-9377676)
chr4 (231-366)||(9335034-9335168)
chr4 (265-354)||(35133457-35133546)
chr4 (231-366)||(30776086-30776221)
[»] chr2 (8 HSPs)
chr2 (231-365)||(12235767-12235901)
chr2 (231-361)||(12257917-12258047)
chr2 (231-360)||(16656604-16656733)
chr2 (234-366)||(16661064-16661196)
chr2 (231-365)||(14705432-14705566)
chr2 (231-365)||(7543246-7543380)
chr2 (242-365)||(12000313-12000436)
chr2 (271-366)||(43626329-43626424)


Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 135 - 368
Target Start/End: Original strand, 43745697 - 43745927
Alignment:
Q  135 tcaaattgataaaaaggccgaccaaatatctaacgaaagaaattagagtcagaccaaatgaaatcatgaatactatccaacaaaggatcaagaatgtacc 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43745697 tcaaattgataaaaaggccgaccaaatatctaacgaaagaaattagagtcagaccaaatgaaatcatgaatacgatccaacaaaggatcaagaatgtacc 43745796  T
Q  235 aaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgttttg 334  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||    
T  43745797 aaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaaga---agttgttttg 43745893  T
Q  335 ttgccttgatcattgtgaataatctcaactctat 368  Q
    ||||||||||||||||||||||||||||||||||    
T  43745894 ttgccttgatcattgtgaataatctcaactctat 43745927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 216 - 368
Target Start/End: Original strand, 43430952 - 43431098
Alignment:
Q  216 aaaggatcaagaatgtaccaaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaac 315  Q
    ||||||| || ||||||||||||| ||||||||||||||||||||||||||||||| | ||||| | ||| |      |||||| ||| |||||||||||    
T  43430952 aaaggattaaaaatgtaccaaagacggtgttttgagggttggtggcggtttgattcatggcagcattaccga------tttcatcatcggtaaaagcaac 43431045  T
Q  316 aaaagaaggagttgttttgttgccttgatcattgtgaataatctcaactctat 368  Q
    |||| |  | |||||||| ||||||||||||||||||| ||||| ||||||||    
T  43431046 aaaaaagagtgttgttttattgccttgatcattgtgaaaaatctgaactctat 43431098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 304 - 354
Target Start/End: Original strand, 12529910 - 12529960
Alignment:
Q  304 agtaaaagcaacaaaagaaggagttgttttgttgccttgatcattgtgaat 354  Q
    ||||||||||||| ||||||| ||||||||||| |||||||||||||||||    
T  12529910 agtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 12529960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 227 - 368
Target Start/End: Complemental strand, 42554324 - 42554183
Alignment:
Q  227 aatgtaccaaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggag 326  Q
    |||||||||||||  |||||||| ||||||||||||||||||| ||||||||| ||||| |||||||||||||||| ||||||||||||||||||||| |    
T  42554324 aatgtaccaaagacagtgttttgggggttggtggcggtttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtg 42554225  T
Q  327 ttgttttgttgccttgatcattgtgaataatctcaactctat 368  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  42554224 ttgttttgttgccttgatcattgtgaataatctcaactctat 42554183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 231 - 368
Target Start/End: Original strand, 28220916 - 28221053
Alignment:
Q  231 taccaaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgt 330  Q
    ||||||||| ||| ||||| |||||| |||| |||||||| |||||||| || || ||||||||||||| ||| || |||||||||||||||||||||||    
T  28220916 taccaaagacggtattttgggggttgttggccgtttgatttttagcagcatcgccaatcaacctttcatcatcggtgaaagcaacaaaagaaggagttgt 28221015  T
Q  331 tttgttgccttgatcattgtgaataatctcaactctat 368  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  28221016 tttgttgccttgatcattgtgaataatctcaaccctat 28221053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 231 - 366
Target Start/End: Complemental strand, 4677673 - 4677538
Alignment:
Q  231 taccaaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgt 330  Q
    |||||||||  ||||||| || ||||||||| | ||||||||||||||| | ||| |||||||||| || |||||||||||||||||||||||| |||||    
T  4677673 taccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggtgttgt 4677574  T
Q  331 tttgttgccttgatcattgtgaataatctcaactct 366  Q
    |||||||||||| ||||||| ||||||||| |||||    
T  4677573 tttgttgccttgttcattgtaaataatctccactct 4677538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 242 - 367
Target Start/End: Complemental strand, 34465370 - 34465245
Alignment:
Q  242 gtgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgttttgttgcctt 341  Q
    ||||| || |||||||| || ||||||||||||||||| | ||| ||||| |||| || || ||||||||||||||||||||| || ||| |||| ||||    
T  34465370 gtgttctgtgggttggtagcagtttgattcttagcagcattaccgatcaatctttgatcatgagtaaaagcaacaaaagaaggtgtggttgtgttacctt 34465271  T
Q  342 gatcattgtgaataatctcaactcta 367  Q
    | ||||||| ||||||||| ||||||    
T  34465270 ggtcattgtcaataatctctactcta 34465245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 368
Target Start/End: Original strand, 15596062 - 15596165
Alignment:
Q  265 ttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgttttgttgccttgatcattgtgaataatctcaact 364  Q
    |||| |||||||||| ||||| |||||||||| || || ||| |||| |||||||||||| ||  || |||| ||||| |||||||| |||||||| |||    
T  15596062 ttgactcttagcagcatcaccaatcaacctttgatcattagtgaaagaaacaaaagaaggtgtaattctgtttccttggtcattgtggataatctcgact 15596161  T
Q  365 ctat 368  Q
    ||||    
T  15596162 ctat 15596165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 231 - 368
Target Start/End: Original strand, 6790379 - 6790516
Alignment:
Q  231 taccaaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgt 330  Q
    |||| ||||| |||||||| ||||||||||| | ||||| ||||||||| ||||| ||||||||||  | ||| || ||||||||||||||||| || ||    
T  6790379 taccgaagatagtgttttgcgggttggtggcagcttgatacttagcagcatcaccgatcaacctttggtcatcggtgaaagcaacaaaagaaggtgtggt 6790478  T
Q  331 tttgttgccttgatcattgtgaataatctcaactctat 368  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  6790479 tttgttaccttggtcattgtgaataatctcaactctat 6790516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 242 - 366
Target Start/End: Original strand, 3148351 - 3148475
Alignment:
Q  242 gtgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgttttgttgcctt 341  Q
    ||||||| |||||| ||||  | ||||||||||||||| ||||| | |||||||| || |||||| ||||||||||||||||| || |||||||||||||    
T  3148351 gtgttttcagggtttgtgggagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgcctt 3148450  T
Q  342 gatcattgtgaataatctcaactct 366  Q
    | |||||||||||||||||||||||    
T  3148451 ggtcattgtgaataatctcaactct 3148475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 231 - 367
Target Start/End: Original strand, 17261361 - 17261497
Alignment:
Q  231 taccaaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgt 330  Q
    ||||||||| ||||||||  |||||  |||| | |||||||||||| || ||||| |||||||||||||  | || |||||||||||||||||||||  |    
T  17261361 taccaaagacggtgttttctgggtttatggcagcttgattcttagcggcatcaccgatcaacctttcatctttagcaaaagcaacaaaagaaggagtaat 17261460  T
Q  331 tttgttgccttgatcattgtgaataatctcaactcta 367  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  17261461 tttgtttccttgatcattgtgaatgatctcaactcta 17261497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 230 - 366
Target Start/End: Complemental strand, 10493135 - 10492999
Alignment:
Q  230 gtaccaaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttg 329  Q
    |||||||||| |||||||| |||||| ||||| | ||||||||||||||| ||||| |||||||||| || ||   | ||||||||||||||||| || |    
T  10493135 gtaccaaagacggtgttttcagggttagtggcagattgattcttagcagcatcaccgatcaacctttgatcattgttgaaagcaacaaaagaaggtgtag 10493036  T
Q  330 ttttgttgccttgatcattgtgaataatctcaactct 366  Q
    || | || |||||||||||||||||||| ||||||||    
T  10493035 ttctatttccttgatcattgtgaataatttcaactct 10492999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 231 - 367
Target Start/End: Original strand, 17269069 - 17269205
Alignment:
Q  231 taccaaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgt 330  Q
    ||||||||| ||||||||  |||||  |||| | |||||||||||| |  ||||| || ||||||||||  | || ||||||||||||||| ||||| ||    
T  17269069 taccaaagacggtgttttctgggttcatggcagcttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaaagacggagtagt 17269168  T
Q  331 tttgttgccttgatcattgtgaataatctcaactcta 367  Q
    ||||||||||||||||||||| |||||||||||||||    
T  17269169 tttgttgccttgatcattgtgtataatctcaactcta 17269205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 266 - 360
Target Start/End: Original strand, 8602738 - 8602832
Alignment:
Q  266 tgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgttttgttgccttgatcattgtgaataatctc 360  Q
    ||||| || ||||| ||||| |||||||||| || ||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||    
T  8602738 tgatttttggcagcatcaccgatcaaccttttatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctc 8602832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 230 - 366
Target Start/End: Complemental strand, 13332284 - 13332148
Alignment:
Q  230 gtaccaaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttg 329  Q
    ||||||||||| ||||||| |||||| ||||| | ||||||||| ||||| ||||| ||||| |||| || ||   | ||||||||||||||||| || |    
T  13332284 gtaccaaagatagtgttttcagggttagtggcagattgattcttggcagcatcaccaatcaatctttgatcattgttgaaagcaacaaaagaaggtgtag 13332185  T
Q  330 ttttgttgccttgatcattgtgaataatctcaactct 366  Q
    || | || |||||||||||||||||||||||||||||    
T  13332184 ttctatttccttgatcattgtgaataatctcaactct 13332148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 231 - 366
Target Start/End: Complemental strand, 27829478 - 27829343
Alignment:
Q  231 taccaaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgt 330  Q
    |||||||||| ||||||||||||||||  || | ||| ||||||||||| ||||| |||||||| |  |  || || ||||||||| ||||||| |||||    
T  27829478 taccaaagatagtgttttgagggttggaagcagcttggttcttagcagcatcaccaatcaacctctgtttgtccgtgaaagcaacacaagaaggtgttgt 27829379  T
Q  331 tttgttgccttgatcattgtgaataatctcaactct 366  Q
     ||||||||||| ||||||||||||||||| |||||    
T  27829378 cttgttgccttgttcattgtgaataatctccactct 27829343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 266 - 368
Target Start/End: Original strand, 8647705 - 8647807
Alignment:
Q  266 tgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgttttgttgccttgatcattgtgaataatctcaactc 365  Q
    ||||| ||||| || ||||| |||||||||| || ||| || ||||||||||||||||| || ||| |||| ||||||||||||||||||||||||||||    
T  8647705 tgatttttagcggcatcaccaatcaacctttgatcatcggtgaaagcaacaaaagaaggtgtagttctgtttccttgatcattgtgaataatctcaactc 8647804  T
Q  366 tat 368  Q
    |||    
T  8647805 tat 8647807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 231 - 366
Target Start/End: Original strand, 8668434 - 8668569
Alignment:
Q  231 taccaaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgt 330  Q
    |||||||||| ||||||| |||||| || || | ||||||||||||||| || || ||||||||||  | ||   | ||||||||||||||||| ||| |    
T  8668434 taccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcgccaatcaacctttgttcattgttgaaagcaacaaaagaaggtgttat 8668533  T
Q  331 tttgttgccttgatcattgtgaataatctcaactct 366  Q
    |  ||| |||||||||||||||||||||||||||||    
T  8668534 tcggtttccttgatcattgtgaataatctcaactct 8668569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 287 - 368
Target Start/End: Original strand, 8655374 - 8655455
Alignment:
Q  287 atcaacctttcatgatcagtaaaagcaacaaaagaaggagttgttttgttgccttgatcattgtgaataatctcaactctat 368  Q
    |||||||||| || |||||| |||||||||| |||||| || ||| | ||||||||||||||||||||||||||||||||||    
T  8655374 atcaacctttgataatcagtgaaagcaacaacagaaggtgtagttctattgccttgatcattgtgaataatctcaactctat 8655455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 366
Target Start/End: Original strand, 8630197 - 8630332
Alignment:
Q  231 taccaaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgt 330  Q
    |||||||||  |||||||| |||||| |||| |  |||| |||||||||  |||| | |||||||| || ||| ||||||||||| || ||||| ||  |    
T  8630197 taccaaagacagtgttttgtgggttgatggcagcctgatccttagcagcaccaccaaccaacctttgatcatcggtaaaagcaacgaaggaaggtgtgat 8630296  T
Q  331 tttgttgccttgatcattgtgaataatctcaactct 366  Q
    ||| ||||||| ||||||||||||||||||||||||    
T  8630297 tttattgccttcatcattgtgaataatctcaactct 8630332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 266 - 368
Target Start/End: Original strand, 1302315 - 1302417
Alignment:
Q  266 tgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgttttgttgccttgatcattgtgaataatctcaactc 365  Q
    |||||||||||||| ||||| |||||||||| || ||| || |||||||||||||| || ||||||||||||||||| || ||||  || ||||| ||||    
T  1302315 tgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatctctactc 1302414  T
Q  366 tat 368  Q
    |||    
T  1302415 tat 1302417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 266 - 368
Target Start/End: Complemental strand, 7876932 - 7876830
Alignment:
Q  266 tgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgttttgttgccttgatcattgtgaataatctcaactc 365  Q
    ||||| || ||||| ||||| |||||||||| || ||  || ||||||||||||||||| |||||| |||||||||| |||||||||||||| || ||||    
T  7876932 tgatttttggcagcatcaccaatcaacctttgatcattcgtgaaagcaacaaaagaaggtgttgttctgttgccttgttcattgtgaataatttcgactc 7876833  T
Q  366 tat 368  Q
    |||    
T  7876832 tat 7876830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 275 - 360
Target Start/End: Original strand, 8591411 - 8591496
Alignment:
Q  275 gcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgttttgttgccttgatcattgtgaataatctc 360  Q
    ||||| ||||| |||||||||| || || ||||||||||||||||||||| ||  || | || |||||||||||||||||||||||    
T  8591411 gcagcatcaccaatcaacctttgatcattagtaaaagcaacaaaagaaggtgtaattctatttccttgatcattgtgaataatctc 8591496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 265 - 366
Target Start/End: Original strand, 8610667 - 8610768
Alignment:
Q  265 ttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgttttgttgccttgatcattgtgaataatctcaact 364  Q
    |||||| |||||||| |||||||||||||||| || | |||  |||||||||||||||||||| ||| |||| ||||| ||||| || || |||||| ||    
T  8610667 ttgatttttagcagcatcacctatcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatctcagct 8610766  T
Q  365 ct 366  Q
    ||    
T  8610767 ct 8610768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 266 - 366
Target Start/End: Complemental strand, 8584634 - 8584534
Alignment:
Q  266 tgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgttttgttgccttgatcattgtgaataatctcaactc 365  Q
    |||| |||||||||  |||| | |||||||| || ||| |||||||||||||| ||||| ||  |||| ||||||| ||| |||||||||||||||||||    
T  8584634 tgatccttagcagcaccaccaaccaacctttgatcatcggtaaaagcaacaaaggaaggtgtgattttattgccttcatcgttgtgaataatctcaactc 8584535  T
Q  366 t 366  Q
    |    
T  8584534 t 8584534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 266 - 342
Target Start/End: Original strand, 8660248 - 8660324
Alignment:
Q  266 tgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgttttgttgccttg 342  Q
    |||||||||||||| ||||| |||||||||| ||  ||||| ||||||||||| ||||| ||||||||||| |||||    
T  8660248 tgattcttagcagcatcaccaatcaacctttgatcgtcagtgaaagcaacaaatgaaggtgttgttttgtttccttg 8660324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 266 - 348
Target Start/End: Original strand, 8104069 - 8104151
Alignment:
Q  266 tgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgttttgttgccttgatcatt 348  Q
    |||||||||||||| ||||| ||||||||||||  |||||| ||||||||| |||| || || ||| |||| |||||||||||    
T  8104069 tgattcttagcagcatcaccgatcaacctttcactatcagtgaaagcaacataagacggtgtcgttctgttcccttgatcatt 8104151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 265 - 351
Target Start/End: Original strand, 8582666 - 8582752
Alignment:
Q  265 ttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgttttgttgccttgatcattgtg 351  Q
    |||||| || ||||| ||||| ||||| |||| |  || ||||||||||||| ||||||| ||||||||||| ||||||||||||||    
T  8582666 ttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtg 8582752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 348
Target Start/End: Complemental strand, 8016391 - 8016309
Alignment:
Q  266 tgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgttttgttgccttgatcatt 348  Q
    |||||||||||||| ||||| ||||||||||||  |||||| ||||||||| |||| || || |||  ||| |||||||||||    
T  8016391 tgattcttagcagcatcaccgatcaacctttcactatcagtgaaagcaacataagacggcgtcgttcggttcccttgatcatt 8016309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 354
Target Start/End: Original strand, 8546721 - 8546767
Alignment:
Q  308 aaagcaacaaaagaaggagttgttttgttgccttgatcattgtgaat 354  Q
    ||||||||| ||||||| ||||||||||| |||||||||||||||||    
T  8546721 aaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 8546767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 8577332 - 8577384
Alignment:
Q  305 gtaaaagcaacaaaagaaggagttgttttgttgccttgatcattgtgaataat 357  Q
    |||||||||||| |||||||||| ||| |||| |||||||||||||| |||||    
T  8577332 gtaaaagcaacacaagaaggagtggttctgtttccttgatcattgtgtataat 8577384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 351
Target Start/End: Original strand, 8572593 - 8572679
Alignment:
Q  265 ttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgttttgttgccttgatcattgtg 351  Q
    |||||| || ||||| ||||| ||||| |||| |  || ||||||||||||| |||| ||||||||| |||| ||||| ||||||||    
T  8572593 ttgatttttggcagcatcaccgatcaatctttgagaattagtaaaagcaacacaagagggagttgttctgtttccttggtcattgtg 8572679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 231 - 366
Target Start/End: Complemental strand, 9323197 - 9323062
Alignment:
Q  231 taccaaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgt 330  Q
    |||||||||| ||||||| |||||| || || | ||||||||||||||| ||||| ||||||||||  | ||   | ||||||||||||||||| |||||    
T  9323197 taccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaagcaacaaaagaaggtgttgt 9323098  T
Q  331 tttgttgccttgatcattgtgaataatctcaactct 366  Q
    |  ||| |||||||||||||||||||||||||||||    
T  9323097 tcggtttccttgatcattgtgaataatctcaactct 9323062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 231 - 366
Target Start/End: Complemental strand, 9377676 - 9377541
Alignment:
Q  231 taccaaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgt 330  Q
    |||||||||| ||||||| |||||| || || | ||||||||||||||| ||||| ||||||||||  | ||   | ||||||||||||||||| |||||    
T  9377676 taccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaagcaacaaaagaaggtgttgt 9377577  T
Q  331 tttgttgccttgatcattgtgaataatctcaactct 366  Q
    |  ||| |||||||||||||||||||||||||||||    
T  9377576 tcggtttccttgatcattgtgaataatctcaactct 9377541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 231 - 366
Target Start/End: Complemental strand, 9335168 - 9335034
Alignment:
Q  231 taccaaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgt 330  Q
    |||||||||| ||||||| |||||| || || | ||||||||||||||| ||||| ||||||||||  | ||   | ||||||||||||||||| |||||    
T  9335168 taccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcacc-atcaacctttgctcattgttgaaagcaacaaaagaaggtgttgt 9335070  T
Q  331 tttgttgccttgatcattgtgaataatctcaactct 366  Q
    |  ||| |||||||||||||||||||||||||||||    
T  9335069 tcggtttccttgatcattgtgaataatctcaactct 9335034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 265 - 354
Target Start/End: Original strand, 35133457 - 35133546
Alignment:
Q  265 ttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgttttgttgccttgatcattgtgaat 354  Q
    ||||||||||||||| ||||| |||||||||| ||  | ||| ||||||| | ||||||| ||||||||||||| |||||| ||||||||    
T  35133457 ttgattcttagcagcatcaccgatcaacctttgatccttagtgaaagcaatacaagaaggtgttgttttgttgctttgatcgttgtgaat 35133546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 366
Target Start/End: Original strand, 30776086 - 30776221
Alignment:
Q  231 taccaaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgt 330  Q
    |||||||||  ||||||||||||||| | || |  || | |||||||||  |||| | |||||||| |  |||||| ||||||||||||||||| ||  |    
T  30776086 taccaaagacagtgttttgagggttgatagcagcctggtccttagcagcagcaccgaccaacctttgaccatcagtgaaagcaacaaaagaaggtgtgat 30776185  T
Q  331 tttgttgccttgatcattgtgaataatctcaactct 366  Q
    |||| |||||| ||| ||||| ||||| ||||||||    
T  30776186 tttgctgccttcatcgttgtggataatttcaactct 30776221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 231 - 365
Target Start/End: Original strand, 12235767 - 12235901
Alignment:
Q  231 taccaaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgt 330  Q
    ||||||||| ||||||||| |||||||  || | ||||||||||||||| ||||| |||||||| | ||  || || ||||||||||||||||| |||||    
T  12235767 taccaaagacggtgttttgcgggttggaagcagcttgattcttagcagcatcaccaatcaacctctgattttcggtgaaagcaacaaaagaaggggttgt 12235866  T
Q  331 tttgttgccttgatcattgtgaataatctcaactc 365  Q
    | | ||||||||||| |||||||| ||||||||||    
T  12235867 tctattgccttgatcgttgtgaatgatctcaactc 12235901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 231 - 361
Target Start/End: Complemental strand, 12258047 - 12257917
Alignment:
Q  231 taccaaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgt 330  Q
    |||||||||  |||| |||||||||||  || | ||||||||||||||| ||||| |||||||||| ||  | ||||||||||||| ||||||| |||||    
T  12258047 taccaaagacagtgtgttgagggttggcagcagcttgattcttagcagcatcaccaatcaacctttgatctttagtaaaagcaacacaagaaggcgttgt 12257948  T
Q  331 tttgttgccttgatcattgtgaataatctca 361  Q
    | |||| |||||||| |||||||| ||||||    
T  12257947 tctgtttccttgatcgttgtgaatgatctca 12257917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 231 - 360
Target Start/End: Complemental strand, 16656733 - 16656604
Alignment:
Q  231 taccaaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgt 330  Q
    ||||||||||||||||||| ||||| | |||   ||||||||||||||| ||||| |||||||||| || || ||| ||||||||||||||||| |||||    
T  16656733 taccaaagatggtgttttgtgggttagcggcaacttgattcttagcagcatcaccgatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgt 16656634  T
Q  331 tttgttgccttgatcattgtgaataatctc 360  Q
    | |||| || || |||||||| || |||||    
T  16656633 tctgtttccctggtcattgtgtatgatctc 16656604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 234 - 366
Target Start/End: Complemental strand, 16661196 - 16661064
Alignment:
Q  234 caaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgtttt 333  Q
    |||||| ||||||||| |||||| | || | ||||| |||||||||  |||| | |||||||| |  |||||||||||||||||||||||| ||  ||||    
T  16661196 caaagacggtgttttgtgggttgatagcagcttgatccttagcagcaccaccgaccaacctttgagcatcagtaaaagcaacaaaagaaggtgtaatttt 16661097  T
Q  334 gttgccttgatcattgtgaataatctcaactct 366  Q
    |||||||| ||| ||||| ||||||||||||||    
T  16661096 gttgccttcatcgttgtggataatctcaactct 16661064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 231 - 365
Target Start/End: Original strand, 14705432 - 14705566
Alignment:
Q  231 taccaaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgt 330  Q
    |||||||||  |||||| |||||||||  || | ||||||||||||||| ||||| |||||||  | ||  || || |||||||||||||||||||||||    
T  14705432 taccaaagacagtgtttcgagggttggcagcagcttgattcttagcagcatcaccaatcaaccgctgattttcggtgaaagcaacaaaagaaggagttgt 14705531  T
Q  331 tttgttgccttgatcattgtgaataatctcaactc 365  Q
    | | ||||||||||| |||||||| || |||||||    
T  14705532 tctattgccttgatcgttgtgaatgatttcaactc 14705566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 231 - 365
Target Start/End: Original strand, 7543246 - 7543380
Alignment:
Q  231 taccaaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgt 330  Q
    |||||||||  ||||||||||||||||  || | |||||||||||||   ||||| |||||||| | ||  || || ||||||||||||||||| |||||    
T  7543246 taccaaagacagtgttttgagggttggaagcagcttgattcttagcattatcaccgatcaacctctgattttcggtgaaagcaacaaaagaaggtgttgt 7543345  T
Q  331 tttgttgccttgatcattgtgaataatctcaactc 365  Q
    | |||||||||| || |||||||| || |||||||    
T  7543346 tctgttgccttggtcgttgtgaatgatttcaactc 7543380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 242 - 365
Target Start/End: Original strand, 12000313 - 12000436
Alignment:
Q  242 gtgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgttttgttgcctt 341  Q
    |||||||||| |||||  |||| ||| || |||||||| ||||| |  ||||||| ||  ||||| ||||||||| ||||||| ||| ||||||||||||    
T  12000313 gtgttttgagagttggcagcggcttggtttttagcagcatcaccaacaaacctttgattttcagtgaaagcaacacaagaaggtgttattttgttgcctt 12000412  T
Q  342 gatcattgtgaataatctcaactc 365  Q
    |||| |||||||| || |||||||    
T  12000413 gatcgttgtgaatgatttcaactc 12000436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 366
Target Start/End: Original strand, 43626329 - 43626424
Alignment:
Q  271 cttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaaggagttgttttgttgccttgatcattgtgaataatctcaactct 366  Q
    ||||||||| ||||| ||||||||||  |  | ||| |||| |||||||||||| || ||| |||| ||||| |||||||| |||||||| |||||    
T  43626329 cttagcagcatcaccaatcaacctttggtccttagtgaaagaaacaaaagaaggtgtagttctgtttccttggtcattgtggataatctctactct 43626424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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