View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14435_low_49 (Length: 355)

Name: NF14435_low_49
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14435_low_49
NF14435_low_49
[»] chr5 (3 HSPs)
chr5 (249-348)||(38121272-38121371)
chr5 (71-159)||(38121094-38121182)
chr5 (1-79)||(38120977-38121055)


Alignment Details
Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 249 - 348
Target Start/End: Original strand, 38121272 - 38121371
Alignment:
Q  249 gtcctaaactgagttttatttcacaatgtgaaccttatttgctttaatttgtgctttaattactctttacgtctcccataagctctgatttagccctatg 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38121272 gtcctaaactgagttttatttcacaatgtgaaccttatttgctttaatttgtgctttaattactctttacgtctcccataagctctgatttagccctatg 38121371  T

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Target: chr5; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 71 - 159
Target Start/End: Original strand, 38121094 - 38121182
Alignment:
Q  71 ttttattttgtaatgtggtaactggtaatgttcatgtagtttttatcttaactttgcatgtttttattttgtaatgtggtaaacacaag 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38121094 ttttattttgtaatgtggtaactggtaatgttcatgtagtttttatcttaactttgcatgtttttattttgtaatgtggtaaacacaag 38121182  T

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Target: chr5; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 38120977 - 38121055
Alignment:
Q  1 taagaacaaagcacaagtttggttagttcaaactctatttctcttcgtcttcctagctctttttccttaattttatttt 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38120977 taagaacaaagcacaagtttggttagttcaaactctatttctcttcgtcttcctagctctttttccttaattttatttt 38121055  T

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