View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14435_low_51 (Length: 355)
Name: NF14435_low_51
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_low_51 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 37160862 - 37161211
Alignment:
| Q |
1 |
ttgcatgcttttttatataggaagtgaagggccctttgtgggtcatatgtatttatgtgatataacaatattggtcacatattatttctgctcgaccaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||| |
|
|
| T |
37160862 |
ttgcatgcttttttatataggaagtgaagggccctttgtgggtcatatgtatttatgtgatataacaatattggtcacat--tcattctgttcgaccaat |
37160959 |
T |
|
| Q |
101 |
catgacaataatccttccttaccctaaccattttgccaagcaccaatctagttgatcccttaatctttactcgatttgttatccttgtgtagcgtgaccg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37160960 |
catgacaataatccttccttaccctaaccattttgccaagcaccaatctagttgatcccttaatctttactcgatttgttatccttgtgtagcgtgaccg |
37161059 |
T |
|
| Q |
201 |
cactcttatagaacgacattcttggtatagaacacaatccccgaacattaagcccgccaaatacaaatctagttgatcgcttaatcattagtatttactc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37161060 |
cactcttatagaacgacattcttggtatagaacacaatcccagaacatcaagcccgccaagcacaaatctagttgatcacttaatcattagtatttactc |
37161159 |
T |
|
| Q |
301 |
gctttgttattcttgtgtagcgtgagccctatcttgtagatcaacattcttg |
352 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37161160 |
gctttgttattcttgtgtagcgtgagcccaatcttgtagatcaacattcttg |
37161211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 135 - 255
Target Start/End: Original strand, 37161115 - 37161242
Alignment:
| Q |
135 |
gccaagcaccaatctagttgatcccttaatc-------tttactcgatttgttatccttgtgtagcgtgaccgcactcttatagaacgacattcttggta |
227 |
Q |
| |
|
||||||||| ||||||||||||| ||||||| |||||||| |||||||| |||||||||||||| | || |||| |||| | ||||||||| || |
|
|
| T |
37161115 |
gccaagcacaaatctagttgatcacttaatcattagtatttactcgctttgttattcttgtgtagcgtgagcccaatcttgtagatcaacattcttgata |
37161214 |
T |
|
| Q |
228 |
tagaacacaatccccgaacattaagccc |
255 |
Q |
| |
|
|||||| |||||| |||||| |||||| |
|
|
| T |
37161215 |
tagaactcaatcctagaacatcaagccc |
37161242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University