View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14435_low_52 (Length: 349)

Name: NF14435_low_52
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14435_low_52
NF14435_low_52
[»] chr3 (21 HSPs)
chr3 (200-332)||(10359984-10360116)
chr3 (19-126)||(9980965-9981072)
chr3 (200-332)||(9981141-9981273)
chr3 (30-126)||(10360185-10360281)
chr3 (131-293)||(10264591-10264751)
chr3 (245-332)||(10130686-10130773)
chr3 (245-332)||(10372242-10372329)
chr3 (30-77)||(10264483-10264530)
chr3 (147-210)||(10430097-10430160)
chr3 (169-226)||(11772695-11772752)
chr3 (19-54)||(10584471-10584506)
chr3 (193-227)||(10134711-10134745)
chr3 (19-67)||(10035589-10035637)
chr3 (179-218)||(10093176-10093215)
chr3 (179-218)||(10200058-10200097)
chr3 (171-228)||(10130614-10130671)
chr3 (193-226)||(10130846-10130879)
chr3 (193-226)||(10372136-10372169)
chr3 (171-228)||(10372344-10372401)
chr3 (200-229)||(10584614-10584643)
chr3 (19-67)||(10130514-10130562)
[»] scaffold0083 (2 HSPs)
scaffold0083 (19-126)||(54065-54172)
scaffold0083 (200-332)||(53864-53996)


Alignment Details
Target: chr3 (Bit Score: 99; Significance: 8e-49; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 200 - 332
Target Start/End: Complemental strand, 10360116 - 10359984
Alignment:
Q  200 tagggtttgtaatattcttaatttgtaacannnnnnnnnngcgacgtgattcttaatttgtaattttaaatgaatgctcgtatgataaaaccatgcattt 299  Q
    ||||||||||||||||||||||||||||||          || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10360116 tagggtttgtaatattcttaatttgtaacattttttgtttgcaacgtgattcttaatttgtaattttaaatgaatgctcgtatgataaaaccatgcattt 10360017  T
Q  300 gttgaattaatattggttctaaatattcatatt 332  Q
    |||||||||||||||||||||||||||||||||    
T  10360016 gttgaattaatattggttctaaatattcatatt 10359984  T

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Target: chr3; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 9980965 - 9981072
Alignment:
Q  19 caaaggcctagctatgtggatgataatctgctcacttgatgaattgaagaaaactgcttctttgattttttatgacaaattgaagactcagcggcttcca 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||    
T  9980965 caaaggcctagctatgtggatgataatctgctcacttgatgaattgaagaaaactgcttctttgattttttatgaggaattgaagactcagcggcatcca 9981064  T
Q  119 ttgattgc 126  Q
    ||||||||    
T  9981065 ttgattgc 9981072  T

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Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 200 - 332
Target Start/End: Original strand, 9981141 - 9981273
Alignment:
Q  200 tagggtttgtaatattcttaatttgtaacannnnnnnnnngcgacgtgattcttaatttgtaattttaaatgaatgctcgtatgataaaaccatgcattt 299  Q
    ||||||||||||||||||||||||||||||          || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9981141 tagggtttgtaatattcttaatttgtaacattttttgtttgcaacgtgattcttaatttgtaattttaaatgaatgctcatatgataaaaccatgcattt 9981240  T
Q  300 gttgaattaatattggttctaaatattcatatt 332  Q
    |||||||||||||||||||||||||||||||||    
T  9981241 gttgaattaatattggttctaaatattcatatt 9981273  T

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Target: chr3; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 30 - 126
Target Start/End: Complemental strand, 10360281 - 10360185
Alignment:
Q  30 ctatgtggatgataatctgctcacttgatgaattgaagaaaactgcttctttgattttttatgacaaattgaagactcagcggcttccattgattgc 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||    
T  10360281 ctatgtggatgataatctgctcacttgatgaattgaagaaaactgcttctttgattttttatgaggaattgaagactcagcagcttccattgattgc 10360185  T

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Target: chr3; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 131 - 293
Target Start/End: Original strand, 10264591 - 10264751
Alignment:
Q  131 ttgtattttattatcatttgaatgtttcctaatatcccgcatgatccggtcagacaaagtacaatgcagtagggtttgtaatattcttaatttgtaacan 230  Q
    |||||||||||||||||||||||||||| ||||| || |||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||      
T  10264591 ttgtattttattatcatttgaatgtttcgtaataacctgcatgatccgatcagacaaagtacaatgtagtaggatttgtaatattcttaatttgtaactt 10264690  T
Q  231 nnnnnnnnngcgacgtgattcttaatttgtaattttaaatgaatgctcgtatgataaaaccat 293  Q
               ||||||||||||||||||||| |||||  |||||||| ||||||||||||||    
T  10264691 tttttttcg--gacgtgattcttaatttgtaactttaagcgaatgctcatatgataaaaccat 10264751  T

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Target: chr3; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 245 - 332
Target Start/End: Original strand, 10130686 - 10130773
Alignment:
Q  245 gtgattcttaatttgtaattttaaatgaatgctcgtatgataaaaccatgcatttgttgaattaatattggttctaaatattcatatt 332  Q
    |||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10130686 gtgattcttaatttgtaactttaagtgaatgctcatatgataaaaccatgcatttgttgaattaatattggttctaaatattcatatt 10130773  T

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Target: chr3; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 245 - 332
Target Start/End: Complemental strand, 10372329 - 10372242
Alignment:
Q  245 gtgattcttaatttgtaattttaaatgaatgctcgtatgataaaaccatgcatttgttgaattaatattggttctaaatattcatatt 332  Q
    |||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10372329 gtgattcttaatttgtaactttaagtgaatgctcatatgataaaaccatgcatttgttgaattaatattggttctaaatattcatatt 10372242  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 10264483 - 10264530
Alignment:
Q  30 ctatgtggatgataatctgctcacttgatgaattgaagaaaactgctt 77  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||    
T  10264483 ctatgtggatgataatcagctcacttgatgaattgaagaaaaatgctt 10264530  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 10430160 - 10430097
Alignment:
Q  147 tttgaatgtttcctaatatcccgcatgatccggtcagacaaagtacaatgcagtagggtttgta 210  Q
    |||| ||||||| ||||| || |||||||||||||||||| | |||||||||||||||||||||    
T  10430160 tttgtatgtttcataataacctgcatgatccggtcagacagattacaatgcagtagggtttgta 10430097  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 11772695 - 11772752
Alignment:
Q  169 gcatgatccggtcagacaaagtacaatgcagtagggtttgtaatattcttaatttgta 226  Q
    ||||||||| || |||||||||| |||||| |||| ||||||||||||||||||||||    
T  11772695 gcatgatcccgttagacaaagtagaatgcattaggatttgtaatattcttaatttgta 11772752  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 10584471 - 10584506
Alignment:
Q  19 caaaggcctagctatgtggatgataatctgctcact 54  Q
    ||||||||||||||||||||||||||||||||||||    
T  10584471 caaaggcctagctatgtggatgataatctgctcact 10584506  T

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Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 227
Target Start/End: Original strand, 10134711 - 10134745
Alignment:
Q  193 aatgcagtagggtttgtaatattcttaatttgtaa 227  Q
    |||||||||||||||||||||||||||||||||||    
T  10134711 aatgcagtagggtttgtaatattcttaatttgtaa 10134745  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 10035589 - 10035637
Alignment:
Q  19 caaaggcctagctatgtggatgataatctgctcacttgatgaattgaag 67  Q
    |||||||||||||||||||||||||||| ||||| ||  ||||||||||    
T  10035589 caaaggcctagctatgtggatgataatcagctcatttcgtgaattgaag 10035637  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 10093176 - 10093215
Alignment:
Q  179 gtcagacaaagtacaatgcagtagggtttgtaatattctt 218  Q
    |||| ||| |||||||||||||||||||||||||||||||    
T  10093176 gtcatacagagtacaatgcagtagggtttgtaatattctt 10093215  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 10200058 - 10200097
Alignment:
Q  179 gtcagacaaagtacaatgcagtagggtttgtaatattctt 218  Q
    |||| ||| |||||||||||||||||||||||||||||||    
T  10200058 gtcatacagagtacaatgcagtagggtttgtaatattctt 10200097  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 10130614 - 10130671
Alignment:
Q  171 atgatccggtcagacaaagtacaatgcagtagggtttgtaatattcttaatttgtaac 228  Q
    |||||| ||||||||||| |||||||  |||||||||| ||||||  |||||||||||    
T  10130614 atgatctggtcagacaaaatacaatgttgtagggtttgcaatatttataatttgtaac 10130671  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 10130846 - 10130879
Alignment:
Q  193 aatgcagtagggtttgtaatattcttaatttgta 226  Q
    ||||| ||||||||||||||||||||||||||||    
T  10130846 aatgcggtagggtttgtaatattcttaatttgta 10130879  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 10372169 - 10372136
Alignment:
Q  193 aatgcagtagggtttgtaatattcttaatttgta 226  Q
    ||||| ||||||||||||||||||||||||||||    
T  10372169 aatgcggtagggtttgtaatattcttaatttgta 10372136  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 10372401 - 10372344
Alignment:
Q  171 atgatccggtcagacaaagtacaatgcagtagggtttgtaatattcttaatttgtaac 228  Q
    |||||| ||||||||||| |||||||  |||||||||| ||||||  |||||||||||    
T  10372401 atgatctggtcagacaaaatacaatgttgtagggtttgcaatatttataatttgtaac 10372344  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 10584614 - 10584643
Alignment:
Q  200 tagggtttgtaatattcttaatttgtaaca 229  Q
    ||||||||||||||||||||||||||||||    
T  10584614 tagggtttgtaatattcttaatttgtaaca 10584643  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 10130514 - 10130562
Alignment:
Q  19 caaaggcctagctatgtggatgataatctgctcacttgatgaattgaag 67  Q
    |||||||| ||||||||||||||||||  ||||| ||| ||||||||||    
T  10130514 caaaggcccagctatgtggatgataattagctcatttggtgaattgaag 10130562  T

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Target: scaffold0083 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 54172 - 54065
Alignment:
Q  19 caaaggcctagctatgtggatgataatctgctcacttgatgaattgaagaaaactgcttctttgattttttatgacaaattgaagactcagcggcttcca 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||    
T  54172 caaaggcctagctatgtggatgataatctgctcacttgatgaattgaagaaaactgcttctttgattttttatgaggaattgaagactcagcggcatcca 54073  T
Q  119 ttgattgc 126  Q
    ||||||||    
T  54072 ttgattgc 54065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 200 - 332
Target Start/End: Complemental strand, 53996 - 53864
Alignment:
Q  200 tagggtttgtaatattcttaatttgtaacannnnnnnnnngcgacgtgattcttaatttgtaattttaaatgaatgctcgtatgataaaaccatgcattt 299  Q
    ||||||||||||||||||||||||||||||          || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  53996 tagggtttgtaatattcttaatttgtaacattttttgtttgcaacgtgattcttaatttgtaattttaaatgaatgctcatatgataaaaccatgcattt 53897  T
Q  300 gttgaattaatattggttctaaatattcatatt 332  Q
    |||||||||||||||||||||||||||||||||    
T  53896 gttgaattaatattggttctaaatattcatatt 53864  T

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