View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_low_54 (Length: 338)
Name: NF14435_low_54
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_low_54 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 40453725 - 40453422
Alignment:
| Q |
20 |
agtaggaggagtgattaaatcagaagctggcttaacccaactccttcttaaaatactatcaaccggttttgaagagtaattgtttgcaatatgttcagtc |
119 |
Q |
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| T |
40453725 |
agtaggaggagtgattaaatcagaagctggcttaacccaactccttcttaaaatactatcaaccggttttgaagagtaattgtttgcaatatgttcagtc |
40453626 |
T |
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| Q |
120 |
actttttctgttgtagtagtacttttcttcttctgatcatgagtactctttgttgcatttttctttttcttatcgctaagctttgaagtagtgtttttct |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40453625 |
actttttctgttgtagtagtacttttcttcttctgatcatgagtactctttgttgcatttttctttttcttatcgctaagctttgaagtagtgtttttct |
40453526 |
T |
|
| Q |
220 |
tggccttttcatggacatgtttagggttgatgggtaaaggagaaggtgaactaggagcagtgacagtgagatctcttgctggagttctttttggatctgt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40453525 |
tggccttttcatggacatgtttagggttgatgggtaaaggagaaggtgaactaggagcagtgacagtgagatctcttgctggagttctttttggatctgt |
40453426 |
T |
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| Q |
320 |
gatg |
323 |
Q |
| |
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|||| |
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| T |
40453425 |
gatg |
40453422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 228
Target Start/End: Original strand, 20008124 - 20008263
Alignment:
| Q |
86 |
ttttgaagagtaattgtttgcaatatgttcagtcactttttctgttgtagtagtacttttcttcttctgatcatgagtactctttgttgcatttttcttt |
185 |
Q |
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| T |
20008124 |
ttttgaagagtaattgtttgcaatttgtttagtaagtttttctgatgtagta---cttttctttttatggacacgggtagccttggttgcttttttattt |
20008220 |
T |
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| Q |
186 |
ttcttatcgctaagctttgaagtagtgtttttcttggcctttt |
228 |
Q |
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||||||| | ||| |||| ||||| ||||||||||||||| |
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| T |
20008221 |
ttcttattatttagcaatgaaatagtgattttcttggcctttt |
20008263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 118
Target Start/End: Complemental strand, 24973587 - 24973555
Alignment:
| Q |
86 |
ttttgaagagtaattgtttgcaatatgttcagt |
118 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
24973587 |
ttttgaagagtaattgtttgcaatttgttcagt |
24973555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 323
Target Start/End: Complemental strand, 31252282 - 31252243
Alignment:
| Q |
284 |
agtgagatctcttgctggagttctttttggatctgtgatg |
323 |
Q |
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| T |
31252282 |
agtgagatctcttgagggagttctttttggatctgtgatg |
31252243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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