View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_low_58 (Length: 325)
Name: NF14435_low_58
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 14 - 316
Target Start/End: Complemental strand, 34274987 - 34274685
Alignment:
| Q |
14 |
catctccattcccttctgaaccattttcagcatcagagatggtatcagcaaacgaacttgaatactcagttgcatcagggtcctcaatttcgttagatgc |
113 |
Q |
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| T |
34274987 |
catcgccattcccttctgaaccattttcagcatcagagatggtatcagcaaacgaacttgaatactcagttgcatcagggtcctcaatttcgttagatgc |
34274888 |
T |
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| Q |
114 |
atcaggaacgacttctgcacttgtaatgtcgatttgttcctcaggaacggactccaccttaatgacatgcttagccatcttcacctttttagtttcctgt |
213 |
Q |
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| T |
34274887 |
atcaggaacgacttctgcacttgtaatgtcgatttgttcctcaggaacggactccaacttaatgacatgcttagccatcttcacctttttagtttcctgt |
34274788 |
T |
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| Q |
214 |
tctgaaccaaaatgcacaagtaaattcaaccaattcaaaatcaacttgttacgcataacatactgctgttatttatttgacagtgcatttatattattat |
313 |
Q |
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| T |
34274787 |
tctgaaccaaaatgcacaagtaaattcaaccaattcaaaatcaacttgttacgtataacatactgctgttatttatttgacagtgcatttatattattat |
34274688 |
T |
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| Q |
314 |
att |
316 |
Q |
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||| |
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| T |
34274687 |
att |
34274685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 34281775 - 34281707
Alignment:
| Q |
30 |
tgaaccattttcagcatcagagatggtatcagcaaacgaacttgaatactcagttgcatcagggtcctc |
98 |
Q |
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| T |
34281775 |
tgaactattttcagcatcagagtctgtatcagcaaaggaactcgaatattcagttgcatcagggtcctc |
34281707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 261
Target Start/End: Original strand, 20229778 - 20229857
Alignment:
| Q |
182 |
gcttagccatcttcacctttttagtttcctgttctgaaccaaaatgcacaagtaaattcaaccaattcaaaatcaacttg |
261 |
Q |
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|||||||||||||||||||||||||| ||||||| || | |||| || || ||||||||| |||||||||| |||||| |
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| T |
20229778 |
gcttagccatcttcacctttttagttacctgttcaaaatctaaattcataactaaattcaatgaattcaaaattaacttg |
20229857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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