View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_low_6 (Length: 657)
Name: NF14435_low_6
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 239 - 640
Target Start/End: Complemental strand, 45242503 - 45242100
Alignment:
| Q |
239 |
atttgactatgttacatgaagtgtacttttggtttgttttattgttgaaatctcttaacaacacacctagtttctgtacatattgtacgtcactacgccc |
338 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45242503 |
atttgactatgttacatgaagtgtatttttggtttgttttattgttgaaatctcttaacaacacacctagtttctgtacatattgtacgtcactacgccc |
45242404 |
T |
|
| Q |
339 |
tatctacattctccttatcgctgaaaacccatttgctgtctgtgggttttctaaaaggaatgaatgactaagtattattttcaaattctgcttgcatggc |
438 |
Q |
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|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45242403 |
catctacattctccttatccctgaaaacccatttgttgtctgtgggttttctaaaaggaatgaatgactaagtattattttcaaattctgcttgcatggc |
45242304 |
T |
|
| Q |
439 |
ttgaaagttgaaaccactcaggactctgcaactgctatttcataaattttggttcaacctgtgttagttgtacggtagtgttgtttgggtttaatatatc |
538 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45242303 |
ttgaaagttgaaaccactcaggactctgcaactgctatttcataaattttggttcaacctgtgttagttgtacggtagtgttgtttgggtttaatatatc |
45242204 |
T |
|
| Q |
539 |
aaatttaaatatggtatg--tataggatgaatatatggtgatttcgacacaccttgtttgtgtcacgtgacacggttaagtcatgcttgatcaattatct |
636 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45242203 |
aaatttaaatatggtatgtatataggatgaatatatggtgatttcgacacaccttgtttgtgtcacgtgacacggttaagtcatgcttgatcaattatct |
45242104 |
T |
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| Q |
637 |
gttc |
640 |
Q |
| |
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|||| |
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| T |
45242103 |
gttc |
45242100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 45242774 - 45242541
Alignment:
| Q |
1 |
ctatattcttatgtgatattgttgaggttactagcatgagaatcatattttattttactaggatgacttcttattccagggatttaaattgacattgaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45242774 |
ctatattcttatgtgatattgttgaggttactagcatgagattcatattttattttactaggatgacttcttgttccagggatttaaattgacattgaaa |
45242675 |
T |
|
| Q |
101 |
gagagccaaggaagaaccactgattggtagtcgaaaccagatgctcaaagaaaaacggcctatatgtcatttaggtatggtgtaaagaagtgttcaaaac |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45242674 |
gagagccaaggaagaaccagtgattggtagtcgaaaccagatgctcaaagaaaaacgacctatatgtcatttaggtatggtgtaaagaagtgttgaaaac |
45242575 |
T |
|
| Q |
201 |
aattattatctaggattttgtatgtatgtgtatc |
234 |
Q |
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| T |
45242574 |
aattattatctaggattttgtatgtatgtgtatc |
45242541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 124
Target Start/End: Original strand, 29449349 - 29449420
Alignment:
| Q |
53 |
ttttactaggatgacttcttattccagggatttaaattgacattgaaagagagccaaggaagaaccactgat |
124 |
Q |
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|||||| ||||||||||||| | ||| |||||||||| ||||||| ||| ||| || |||||||||||||| |
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| T |
29449349 |
ttttacaaggatgacttcttgtaccaaggatttaaatcgacattgtaagggagtgaaagaagaaccactgat |
29449420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 484 - 530
Target Start/End: Original strand, 11425447 - 11425493
Alignment:
| Q |
484 |
attttggttcaacctgtgttagttgtacggtagtgttgtttgggttt |
530 |
Q |
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| T |
11425447 |
attttggttcaacacgtgttagtcgtatggtagtgttgtttgggttt |
11425493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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