View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14435_low_61 (Length: 309)
Name: NF14435_low_61
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_low_61 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 45702119 - 45701838
Alignment:
| Q |
1 |
taaatagttaatttgttctttaaattatcactannnnnnnnaactgaaagaataataatttagagactaaattgaatagacaataataggatcaaattaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
45702119 |
taaatagttaatttgttctttaaattatcaatattttttttaactgaaagaataataatttagagac--------------aataataggatcaaattaa |
45702034 |
T |
|
| Q |
101 |
gtccttattcactaaagaaaccatctggcacacgatccatcataacatgtgggtgacattcgcttgattattagtccatgcaatg-----caattaaaaa |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45702033 |
gtccttattcactaaagaaaccatctggcacacgatccagcataacatgtgggtgacattcgcttgattattagtccatgcaatgcaatgcaattaaaaa |
45701934 |
T |
|
| Q |
196 |
acgagaaaatgagtgttcatcaatggacccattttttaacatggaaggacggttggatgaattgagtacgtgagacgaaatgtgattagtagagat |
291 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45701933 |
acgagaaaatgagtgttcatagatggacccattttttaacatggaaggacggttggatgaattgagtacgtgagacgaaatgtgattagtagagat |
45701838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University