View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_low_63 (Length: 302)
Name: NF14435_low_63
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_low_63 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 297
Target Start/End: Complemental strand, 4570815 - 4570535
Alignment:
| Q |
17 |
aaatgtctgtttttatattaggtaaagaatttctattcgaaagtcaactgtcaaggttaggtgggaaatttcaatatgttaacacattaatcatttgttg |
116 |
Q |
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| T |
4570815 |
aaatgtctgtttttatattaggtaaagaatttctattcgaaagtcaactgtcaaggttaggtgggaaatttcaatatattaacacattaatcatttgttg |
4570716 |
T |
|
| Q |
117 |
agtcctaccagcctttcttagcttgcttgagtttcgtatatgttaaaaggacttatgtgcatcatttaaaacttataaggataacattttaactgttaca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4570715 |
agtcctaccagcctttcttagcttgcttgagtttcgtatatgttaaaaggacttatgtgcatcatttaaaacttataaggataacattttaacagttaca |
4570616 |
T |
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| Q |
217 |
actactgaaccagaactgaaatatcaactaaaatttctccatatttagtagttgctgaaaacaaaattcattcccacgatc |
297 |
Q |
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| T |
4570615 |
actactgaaccagaactgaaatttcaactaaaatttctccatgtttagtagttgttgaaaacaaaattcattcccacgatc |
4570535 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 236
Target Start/End: Complemental strand, 40842025 - 40841935
Alignment:
| Q |
146 |
agtttcgtatatgttaaaaggacttatgtgcatcatttaaaacttataaggataacattttaactgttacaactactgaaccagaactgaa |
236 |
Q |
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||||| |||||||| |||||||| || |||||| ||||||||||| ||||| ||||||||||| |||| |||| |||||||| ||||| |
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| T |
40842025 |
agttttgtatatgtcaaaaggacctaactgcatcttttaaaacttacaaggacaacattttaacaattactactagggaaccagagctgaa |
40841935 |
T |
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