View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14435_low_71 (Length: 271)

Name: NF14435_low_71
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14435_low_71
NF14435_low_71
[»] chr6 (3 HSPs)
chr6 (1-255)||(33738060-33738313)
chr6 (151-255)||(33737649-33737753)
chr6 (194-250)||(33089590-33089646)
[»] chr2 (2 HSPs)
chr2 (184-254)||(13866958-13867028)
chr2 (197-249)||(38077006-38077058)
[»] chr5 (4 HSPs)
chr5 (196-247)||(4273309-4273360)
chr5 (179-249)||(41830937-41831007)
chr5 (194-250)||(4855779-4855835)
chr5 (194-250)||(12407660-12407716)
[»] chr7 (3 HSPs)
chr7 (196-250)||(18765369-18765422)
chr7 (196-254)||(21147978-21148036)
chr7 (194-254)||(34754740-34754800)
[»] chr8 (1 HSPs)
chr8 (214-250)||(21130696-21130732)
[»] chr4 (1 HSPs)
chr4 (190-250)||(10192371-10192430)
[»] chr1 (3 HSPs)
chr1 (179-235)||(29793613-29793669)
chr1 (194-250)||(33204324-33204379)
chr1 (194-246)||(40833802-40833854)


Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 33738313 - 33738060
Alignment:
Q  1 taagcagcaatgttcatttaaatttgttggttgttaggaaacaccagacacaacactgacacattgacacatagatgttgataataattttttaaaaata 100  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||  |||||| ||||| ||||||||| ||||||||| |||    
T  33738313 taagcagcaatgttcatttaaatttcttggttgttagaaaacaccagacacaacactgacac--tgacacgtagatattgataatatttttttaaatata 33738216  T
Q  101 aa-gtgattgaatataactaatgtgtcggtgtcgcgttggacttacatgctttcaatttgaagtatcggggttgcataaggccagtttgtatttacttat 199  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33738215 aaagtgattgaatataactaatgtgtcggtgtcgcgttggacttacatgctttcaatttgaagtatcggggttgtataaggccagtttgtatttacttat 33738116  T
Q  200 ttgagcttgtttattgacataaatatttgtgagactgtttgagagaacttaagaac 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33738115 ttgagcttgtttattgacataaatatttgtgagactgtttgagagaacttaagaac 33738060  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 255
Target Start/End: Complemental strand, 33737753 - 33737649
Alignment:
Q  151 ttcaatttgaagtatcggggttgcataaggccagtttgtatttacttatttgagcttgtttattgacataaatatttgtgagactgtttgagagaactta 250  Q
    |||||||||||| ||||| ||| ||||||| | ||||| | | ||||||| ||| || | |||||||||||| | |||||  ||||||||||||||||||    
T  33737753 ttcaatttgaagcatcggtgttacataaggtctgtttggaatgacttattcgagtttatctattgacataaacacttgtgcaactgtttgagagaactta 33737654  T
Q  251 agaac 255  Q
     ||||    
T  33737653 tgaac 33737649  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 33089646 - 33089590
Alignment:
Q  194 acttatttgagcttgtttattgacataaatatttgtgagactgtttgagagaactta 250  Q
    |||||||||||||| | || |||||||  ||||||||||||| ||| ||||||||||    
T  33089646 acttatttgagcttatctactgacatatgtatttgtgagactatttcagagaactta 33089590  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 13867028 - 13866958
Alignment:
Q  184 gtttgtatttacttatttgagcttgtttattgacataaatatttgtgagactgtttgagagaacttaagaa 254  Q
    ||||| ||| || ||||||||||| | || || |||||| | |||||||||||||||||||||||||||||    
T  13867028 gtttggattgacctatttgagcttatctactgccataaacacttgtgagactgtttgagagaacttaagaa 13866958  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 38077006 - 38077058
Alignment:
Q  197 tatttgagcttgtttattgacataaatatttgtgagactgtttgagagaactt 249  Q
    ||||||||||| | |||| ||||||| | |||||||| |||||||||||||||    
T  38077006 tatttgagcttttctattcacataaacacttgtgagattgtttgagagaactt 38077058  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 247
Target Start/End: Original strand, 4273309 - 4273360
Alignment:
Q  196 ttatttgagcttgtttattgacataaatatttgtgagactgtttgagagaac 247  Q
    |||||| ||||||| ||||| |||||| |||||||||| |||||||||||||    
T  4273309 ttattttagcttgtctattggcataaacatttgtgagattgtttgagagaac 4273360  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 249
Target Start/End: Complemental strand, 41831007 - 41830937
Alignment:
Q  179 ggccagtttgtatttacttatttgagcttgtttattgacataaatatttgtgagactgtttgagagaactt 249  Q
    |||| ||||| ||| ||||||||||| |||| || || |||||| || |||||||||||||| ||||||||    
T  41831007 ggcctgtttggattgacttatttgagtttgtgtactgtcataaacatctgtgagactgtttgggagaactt 41830937  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 4855835 - 4855779
Alignment:
Q  194 acttatttgagcttgtttattgacataaatatttgtgagactgtttgagagaactta 250  Q
    |||||||||||||| | || |||| |||| | |||||||||||||||||||| ||||    
T  4855835 acttatttgagcttatataatgacttaaacacttgtgagactgtttgagagagctta 4855779  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 12407660 - 12407716
Alignment:
Q  194 acttatttgagcttgtttattgacataaatatttgtgagactgtttgagagaactta 250  Q
    |||||||||| ||| | |||||||||||| | ||||||||| |||||||||| ||||    
T  12407660 acttatttgaacttatctattgacataaacacttgtgagacggtttgagagagctta 12407716  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 18765422 - 18765369
Alignment:
Q  196 ttatttgagcttgtttattgacataaatatttgtgagactgtttgagagaactta 250  Q
    |||||||||||| | ||||||||||| | |||||||||||||||| |||||||||    
T  18765422 ttatttgagcttatctattgacataagt-tttgtgagactgtttgggagaactta 18765369  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 254
Target Start/End: Original strand, 21147978 - 21148036
Alignment:
Q  196 ttatttgagcttgtttattgacataaatatttgtgagactgtttgagagaacttaagaa 254  Q
    |||||||||  | |||| |||||||||||||||||||| ||| |||||||||| |||||    
T  21147978 ttatttgagtgtatttactgacataaatatttgtgagagtgtgtgagagaactaaagaa 21148036  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 254
Target Start/End: Original strand, 34754740 - 34754800
Alignment:
Q  194 acttatttgagcttgtttattgacataaatatttgtgagactgtttgagagaacttaagaa 254  Q
    |||| ||||||||| | |||||||| ||| | || ||||||||||||||||| ||||||||    
T  34754740 acttgtttgagcttatctattgacacaaacacttatgagactgtttgagagagcttaagaa 34754800  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 21130732 - 21130696
Alignment:
Q  214 tgacataaatatttgtgagactgtttgagagaactta 250  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  21130732 tgacataaatacttgtgagactgtttgagagagctta 21130696  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 10192430 - 10192371
Alignment:
Q  190 atttacttatttgagcttgtttattgacataaatatttgtgagactgtttgagagaactta 250  Q
    |||| ||||||||||||| | || || |||||| |||||||| ||||||||||||||||||    
T  10192430 atttgcttatttgagcttatgtactggcataaacatttgtga-actgtttgagagaactta 10192371  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 29793613 - 29793669
Alignment:
Q  179 ggccagtttgtatttacttatttgagcttgtttattgacataaatatttgtgagact 235  Q
    ||||| |||||||| |||||||||||||| | || ||||||||| | ||||||||||    
T  29793613 ggccaatttgtattgacttatttgagcttatctactgacataaacacttgtgagact 29793669  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 33204324 - 33204379
Alignment:
Q  194 acttatttgagcttgtttattgacataaatatttgtgagactgtttgagagaactta 250  Q
    |||||||||||||| | || |||||||| | |||||||||||||||| |||||||||    
T  33204324 acttatttgagcttatctactgacataagt-tttgtgagactgtttgggagaactta 33204379  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 40833802 - 40833854
Alignment:
Q  194 acttatttgagcttgtttattgacataaatatttgtgagactgtttgagagaa 246  Q
    |||||||||||||| | |||||| |||| || |||||| ||||||||||||||    
T  40833802 acttatttgagcttatctattgagataagtaattgtgacactgtttgagagaa 40833854  T

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