View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_low_73 (Length: 267)
Name: NF14435_low_73
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_low_73 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 86 - 249
Target Start/End: Complemental strand, 7422786 - 7422623
Alignment:
| Q |
86 |
cctgttgaattgcaaactctgtgattgctttcagatccctggctccttggtaatcaacgggtggctttccgggggaaaacgcctttatagttggaaatcc |
185 |
Q |
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| T |
7422786 |
cctgttgaattgcaaactctgtgattgctttcagatccctggctccttggtaatcaacgggtggctttccgggggaaaacgcctttatagttggaaatcc |
7422687 |
T |
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| Q |
186 |
tctaataccatattcctgagccagagacttgtgagcatcagcatcaagtgctgccacagtaact |
249 |
Q |
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| T |
7422686 |
tctaataccatattcatgagccagagacttgtgagcatcagcatcaagtgctgccacagtaact |
7422623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 183
Target Start/End: Complemental strand, 7512262 - 7512166
Alignment:
| Q |
88 |
tgttgaattgcaaactctgtgattgctttcagatccctggctccttggtaatcaacgggtggctttccgggggaaaacgccttta-tagttggaaat |
183 |
Q |
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| T |
7512262 |
tgttgaagtgcaaattatgtgattggtttgacatctctggctccttggtaatcaaccggtggtttcccaggggcaaacacctttattagttggaaat |
7512166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 183
Target Start/End: Complemental strand, 7516546 - 7516450
Alignment:
| Q |
88 |
tgttgaattgcaaactctgtgattgctttcagatccctggctccttggtaatcaacgggtggctttccgggggaaaacgccttta-tagttggaaat |
183 |
Q |
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| T |
7516546 |
tgttgaagtgcaaattatgtgattggtttgacatctctggctccttggtaatcaaccggtggtttcccaggggcaaacacctttattagttggaaat |
7516450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 86 - 204
Target Start/End: Original strand, 36638094 - 36638212
Alignment:
| Q |
86 |
cctgttgaattgcaaactctgtgattgctttcagatccctggctccttggtaatcaacgggtggctttccgggggaaaacgcctttatagttggaaatcc |
185 |
Q |
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||||||||| |||||| |||| ||| | ||| | || |||||||||||||||||||| ||||| ||||| || |||||| ||||||||||||||||||| |
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| T |
36638094 |
cctgttgaagtgcaaattctgcgatcggtttaacgtctctggctccttggtaatcaactggtggttttccaggtgaaaacacctttatagttggaaatcc |
36638193 |
T |
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| Q |
186 |
tctaataccatattcctga |
204 |
Q |
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| T |
36638194 |
tctaataccatattcctga |
36638212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 36639114 - 36639163
Alignment:
| Q |
200 |
cctgagccagagacttgtgagcatcagcatcaagtgctgccacagtaact |
249 |
Q |
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| T |
36639114 |
cctgagccagagattggtgagcatcagcatcaagtgctgctacagtaact |
36639163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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