View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14435_low_74 (Length: 264)

Name: NF14435_low_74
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14435_low_74
NF14435_low_74
[»] chr6 (3 HSPs)
chr6 (23-264)||(6130266-6130507)
chr6 (20-264)||(6105319-6105563)
chr6 (20-264)||(6860712-6860956)
[»] chr5 (3 HSPs)
chr5 (137-264)||(11791830-11791957)
chr5 (137-198)||(11836078-11836139)
chr5 (137-201)||(11883743-11883807)


Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 23 - 264
Target Start/End: Original strand, 6130266 - 6130507
Alignment:
Q  23 gggcctaattcagctgcgaggtgtagtaaattatttccaaatatgtctacggacgttttaaaccctttttggccttctatttcagatatgagtttgaata 122  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||| ||| ||||||||||||| |    
T  6130266 gggcctaattcagctgcgaggtgtagtaagttatttccaaatatgtctacggacgttttaagccctttttggccatctatctcatatatgagtttgaaca 6130365  T
Q  123 ctctgtcttgacgattcaaaattgcatgtgcaaatatacctcttttgtttttgtccataacccataaaaggtcaggatttgcttccttcatattatttat 222  Q
    || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||   ||||||    
T  6130366 ctttgtcttgacgatttaaaattgcatgtgcaaatatacctcttttgtttttgtccattgcccataaaaggtcaggatttgcttccctcattgaatttat 6130465  T
Q  223 aaactctacaattccatacttggctgcttgtaacatagcatc 264  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  6130466 aaactctataattccatacttggctgcttgtaacatagcatc 6130507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 264
Target Start/End: Complemental strand, 6105563 - 6105319
Alignment:
Q  20 gaagggcctaattcagctgcgaggtgtagtaaattatttccaaatatgtctacggacgttttaaaccctttttggccttctatttcagatatgagtttga 119  Q
    ||||||||||| |||||||||||||||| ||| |||||| |||||||||||  ||  ||||| ||| ||||||||||||| || ||  ||||||||||||    
T  6105563 gaagggcctaactcagctgcgaggtgtaataagttattttcaaatatgtctttggtagttttcaactctttttggccttccatctcgtatatgagtttga 6105464  T
Q  120 atactctgtcttgacgattcaaaattgcatgtgcaaatatacctcttttgtttttgtccataacccataaaaggtcaggatttgcttccttcatattatt 219  Q
    | ||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||| ||||   |||    
T  6105463 acactttgtcttgacgatttaaaattgcatgtgcaaatatacctcttttgtatttgtccatggcccataaaaggtcaggatttgcttccctcattgaatt 6105364  T
Q  220 tataaactctacaattccatacttggctgcttgtaacatagcatc 264  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  6105363 tataaactctataattccatacttggctgcttgtaacatagcatc 6105319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 264
Target Start/End: Original strand, 6860712 - 6860956
Alignment:
Q  20 gaagggcctaattcagctgcgaggtgtagtaaattatttccaaatatgtctacggacgttttaaaccctttttggccttctatttcagatatgagtttga 119  Q
    |||||||||||||||||||| ||||| ||||| || |||||||||||||||| ||| ||||| |||||||  |||||||| || | | ||| |||| |||    
T  6860712 gaagggcctaattcagctgcaaggtggagtaagttgtttccaaatatgtctatggatgttttcaacccttcatggccttcaatcttatatacgagtctga 6860811  T
Q  120 atactctgtcttgacgattcaaaattgcatgtgcaaatatacctcttttgtttttgtccataacccataaaaggtcaggatttgcttccttcatattatt 219  Q
    | || ||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||| ||||   |||    
T  6860812 agacactggctttacgatttaaaattgcatgtgcaaatatacctcttttgtttttgtccatagcatataaaaggtcaggatttgcttccctcattgaatt 6860911  T
Q  220 tataaactctacaattccatacttggctgcttgtaacatagcatc 264  Q
    ||||||||||| | |||||| ||||||||||||||||||||||||    
T  6860912 tataaactctaaagttccatgcttggctgcttgtaacatagcatc 6860956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 264
Target Start/End: Original strand, 11791830 - 11791957
Alignment:
Q  137 ttcaaaattgcatgtgcaaatatacctcttttgtttttgtccataacccataaaaggtcaggatttgcttccttcatattatttataaactctacaattc 236  Q
    |||||||||||||||| |||||| |||||||| ||||| || ||| ||||||| |||||||| || |||| | ||||   || ||| ||||| | | |||    
T  11791830 ttcaaaattgcatgtgaaaatatgcctcttttatttttatcaatagcccataagaggtcagggttagctttcctcattgcatctatgaactcaatatttc 11791929  T
Q  237 catacttggctgcttgtaacatagcatc 264  Q
    ||| ||| |||||||||||||| |||||    
T  11791930 catgcttagctgcttgtaacatggcatc 11791957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 11836078 - 11836139
Alignment:
Q  137 ttcaaaattgcatgtgcaaatatacctcttttgtttttgtccataacccataaaaggtcagg 198  Q
    |||||||||||||||| |||||| |||||||| ||||| || |||  |||||| ||||||||    
T  11836078 ttcaaaattgcatgtgaaaatatgcctcttttatttttatcaatagaccataagaggtcagg 11836139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 11883743 - 11883807
Alignment:
Q  137 ttcaaaattgcatgtgcaaatatacctcttttgtttttgtccataacccataaaaggtcaggatt 201  Q
    |||||||||||||||| |||||  |||||||| ||||| || ||  ||||||| |||||||||||    
T  11883743 ttcaaaattgcatgtgaaaatacgcctcttttatttttatcaatggcccataagaggtcaggatt 11883807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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