View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14435_low_75 (Length: 260)

Name: NF14435_low_75
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14435_low_75
NF14435_low_75
[»] chr6 (4 HSPs)
chr6 (1-244)||(35162044-35162273)
chr6 (12-49)||(3212276-3212313)
chr6 (12-49)||(9908204-9908241)
chr6 (9-70)||(31872862-31872923)
[»] chr3 (9 HSPs)
chr3 (98-170)||(29918554-29918626)
chr3 (98-170)||(29967707-29967779)
chr3 (98-170)||(29929225-29929297)
chr3 (98-170)||(29978379-29978451)
chr3 (120-170)||(29915760-29915810)
chr3 (120-170)||(29964913-29964963)
chr3 (12-49)||(51760204-51760241)
chr3 (12-49)||(52638068-52638105)
chr3 (13-49)||(44414042-44414078)
[»] chr2 (4 HSPs)
chr2 (10-66)||(36547407-36547463)
chr2 (15-49)||(4898200-4898234)
chr2 (15-49)||(4945594-4945628)
chr2 (12-49)||(30202519-30202556)
[»] chr7 (12 HSPs)
chr7 (12-49)||(3838154-3838191)
chr7 (12-49)||(46451010-46451047)
chr7 (11-49)||(3106013-3106051)
chr7 (15-49)||(24934586-24934620)
chr7 (15-49)||(28003249-28003283)
chr7 (12-49)||(30005944-30005981)
chr7 (12-49)||(31549828-31549865)
chr7 (12-45)||(32389223-32389256)
chr7 (12-49)||(39970192-39970229)
chr7 (12-49)||(47778464-47778501)
chr7 (14-46)||(30457769-30457801)
chr7 (13-45)||(31417586-31417618)
[»] chr8 (7 HSPs)
chr8 (15-63)||(7428963-7429010)
chr8 (14-49)||(24820333-24820368)
chr8 (12-46)||(42149164-42149198)
chr8 (12-49)||(19293051-19293088)
chr8 (21-49)||(7428927-7428955)
chr8 (12-48)||(34540733-34540769)
chr8 (68-100)||(36058767-36058799)
[»] chr4 (4 HSPs)
chr4 (10-45)||(18488559-18488594)
chr4 (20-49)||(6462747-6462776)
chr4 (12-49)||(54787017-54787054)
chr4 (12-49)||(55501237-55501274)
[»] chr5 (10 HSPs)
chr5 (15-49)||(21152623-21152657)
chr5 (15-49)||(21159758-21159792)
chr5 (15-49)||(21163565-21163599)
chr5 (23-52)||(6271955-6271984)
chr5 (12-49)||(9005015-9005052)
chr5 (12-45)||(10495250-10495283)
chr5 (12-49)||(12165352-12165389)
chr5 (12-49)||(15966678-15966715)
chr5 (12-49)||(17096511-17096548)
chr5 (12-49)||(36137083-36137120)
[»] chr1 (7 HSPs)
chr1 (15-49)||(47011315-47011349)
chr1 (20-49)||(14214605-14214634)
chr1 (12-49)||(34662440-34662477)
chr1 (12-49)||(35049967-35050004)
chr1 (12-49)||(48605138-48605175)
chr1 (20-49)||(52923399-52923428)
chr1 (10-46)||(25547537-25547573)


Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 35162044 - 35162273
Alignment:
Q  1 atgtgattttttaatataaatcacatacatcatttattgaatgaacctacaattataaattttgttataaattttgtttataatagtgatcaga---tgt 97  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||            ||||||||||||||||   |||    
T  35162044 atgtggttttttaatataaatcacatacatcatttattgaatgaatctacaattataaattttgtt------------tataatagtgatcagaaggtgt 35162131  T
Q  98 atataactattcgtacactatatattcttgcactagaggagaaaaccgttcaaaatcattaaaaggcacatctnnnnnnnttatatgaatagtaaaccaa 197  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||       | ||||||||||||||||||    
T  35162132 atataactattcgtacactg-atattcttgcactagaggagaaaaccgttcaaaatcattaaaaggcacatctaaaaaaataatatgaatagtaaaccaa 35162230  T
Q  198 tatttgacaaaagtttaattggatggacatgtataagcatcttttat 244  Q
    ||||||||||||||    |||||||||||||||||||||||||||||    
T  35162231 tatttgacaaaagt----ttggatggacatgtataagcatcttttat 35162273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 3212313 - 3212276
Alignment:
Q  12 taatataaatcacatacatcatttattgaatgaaccta 49  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  3212313 taatataaatcacatacatcattaattgaatgaaccta 3212276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 9908204 - 9908241
Alignment:
Q  12 taatataaatcacatacatcatttattgaatgaaccta 49  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  9908204 taatatgaatcacatacatcattaattgaatgaaccta 9908241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 31872923 - 31872862
Alignment:
Q  9 ttttaatataaatcacatacatcatttattgaatgaacctacaattataaattttgttataa 70  Q
    |||| |||| || ||||||||||||| |||||||||||||| || | |||||||| ||||||    
T  31872923 tttttatatgaaccacatacatcattaattgaatgaacctaaaaatttaaattttcttataa 31872862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 29918554 - 29918626
Alignment:
Q  98 atataactattcgtacactatatattcttgcactagaggagaaaaccgttcaaaatcattaaaaggcacatct 170  Q
    |||||||||||| |  ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  29918554 atataactattcttgaactatatattcttgcactaaaggagaaaaccgttcaaaatcatcaaaaggcacatct 29918626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 29967707 - 29967779
Alignment:
Q  98 atataactattcgtacactatatattcttgcactagaggagaaaaccgttcaaaatcattaaaaggcacatct 170  Q
    |||||||||||| |  ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  29967707 atataactattcttgaactatatattcttgcactaaaggagaaaaccgttcaaaatcatcaaaaggcacatct 29967779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 29929297 - 29929225
Alignment:
Q  98 atataactattcgtacactatatattcttgcactagaggagaaaaccgttcaaaatcattaaaaggcacatct 170  Q
    |||||||||||| |  ||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||    
T  29929297 atataactattcttcaactatatattcttgcactaaaggagaaaatcgttcaaaatcatcaaaaggcacatct 29929225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 29978451 - 29978379
Alignment:
Q  98 atataactattcgtacactatatattcttgcactagaggagaaaaccgttcaaaatcattaaaaggcacatct 170  Q
    |||||||||||| |  ||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||    
T  29978451 atataactattcttcaactatatattcttgcactaaaggagaaaatcgttcaaaatcatcaaaaggcacatct 29978379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 29915760 - 29915810
Alignment:
Q  120 tattcttgcactagaggagaaaaccgttcaaaatcattaaaaggcacatct 170  Q
    ||||||||||||| |  |||||||||||||| ||||| |||||||||||||    
T  29915760 tattcttgcactaaaaaagaaaaccgttcaacatcatcaaaaggcacatct 29915810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 29964913 - 29964963
Alignment:
Q  120 tattcttgcactagaggagaaaaccgttcaaaatcattaaaaggcacatct 170  Q
    ||||||||||||| |  |||||||||||||| ||||| |||||||||||||    
T  29964913 tattcttgcactaaaaaagaaaaccgttcaacatcatcaaaaggcacatct 29964963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 51760241 - 51760204
Alignment:
Q  12 taatataaatcacatacatcatttattgaatgaaccta 49  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  51760241 taatatgaatcacatacatcattaattgaatgaaccta 51760204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 52638105 - 52638068
Alignment:
Q  12 taatataaatcacatacatcatttattgaatgaaccta 49  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  52638105 taatataaatcacatacattattaattgaatgaaccta 52638068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 44414042 - 44414078
Alignment:
Q  13 aatataaatcacatacatcatttattgaatgaaccta 49  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  44414042 aatataaatcacatacatcattaatttaatgaaccta 44414078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 36547407 - 36547463
Alignment:
Q  10 tttaatataaatcacatacatcatttattgaatgaacctacaattataaattttgtt 66  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||  |||||||||||    
T  36547407 tttaatatagatcacatacatcatttattgaatgaacctgcaatattaaattttgtt 36547463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 4898234 - 4898200
Alignment:
Q  15 tataaatcacatacatcatttattgaatgaaccta 49  Q
    |||||||||||||||||||| ||||||||||||||    
T  4898234 tataaatcacatacatcattaattgaatgaaccta 4898200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 4945628 - 4945594
Alignment:
Q  15 tataaatcacatacatcatttattgaatgaaccta 49  Q
    |||||||||||||||||||| ||||||||||||||    
T  4945628 tataaatcacatacatcattaattgaatgaaccta 4945594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 30202556 - 30202519
Alignment:
Q  12 taatataaatcacatacatcatttattgaatgaaccta 49  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  30202556 taatatgaatcacatacatcattgattgaatgaaccta 30202519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 3838191 - 3838154
Alignment:
Q  12 taatataaatcacatacatcatttattgaatgaaccta 49  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  3838191 taatataaatcacatacatcattgattgaatgaaccta 3838154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 46451047 - 46451010
Alignment:
Q  12 taatataaatcacatacatcatttattgaatgaaccta 49  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  46451047 taatataaatcacatacatcattaattgaatgaaccta 46451010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 3106013 - 3106051
Alignment:
Q  11 ttaatataaatcacatacatcatttattgaatgaaccta 49  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  3106013 ttaatatagaccacatacatcatttattgaatgaaccta 3106051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 24934620 - 24934586
Alignment:
Q  15 tataaatcacatacatcatttattgaatgaaccta 49  Q
    |||||| ||||||||||||||||||||||||||||    
T  24934620 tataaaccacatacatcatttattgaatgaaccta 24934586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 28003249 - 28003283
Alignment:
Q  15 tataaatcacatacatcatttattgaatgaaccta 49  Q
    |||||||||||||||||||| ||||||||||||||    
T  28003249 tataaatcacatacatcattaattgaatgaaccta 28003283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 30005944 - 30005981
Alignment:
Q  12 taatataaatcacatacatcatttattgaatgaaccta 49  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  30005944 taatatgaatcacatacatcattaattgaatgaaccta 30005981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 31549865 - 31549828
Alignment:
Q  12 taatataaatcacatacatcatttattgaatgaaccta 49  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  31549865 taatataaaccacatacatcattgattgaatgaaccta 31549828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 32389223 - 32389256
Alignment:
Q  12 taatataaatcacatacatcatttattgaatgaa 45  Q
    |||||| |||||||||||||||||||||||||||    
T  32389223 taatatgaatcacatacatcatttattgaatgaa 32389256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 39970229 - 39970192
Alignment:
Q  12 taatataaatcacatacatcatttattgaatgaaccta 49  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  39970229 taatataaaccacatacatcattgattgaatgaaccta 39970192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 47778501 - 47778464
Alignment:
Q  12 taatataaatcacatacatcatttattgaatgaaccta 49  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  47778501 taatataaatcacatacattattaattgaatgaaccta 47778464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 30457801 - 30457769
Alignment:
Q  14 atataaatcacatacatcatttattgaatgaac 46  Q
    ||||| |||||||||||||||||||||||||||    
T  30457801 atatagatcacatacatcatttattgaatgaac 30457769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 31417586 - 31417618
Alignment:
Q  13 aatataaatcacatacatcatttattgaatgaa 45  Q
    |||| ||||||||||||||||||||||||||||    
T  31417586 aataaaaatcacatacatcatttattgaatgaa 31417618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 7428963 - 7429010
Alignment:
Q  15 tataaatcacatacatcatttattgaatgaacctacaattataaatttt 63  Q
    ||||||||||||||||||||||||||||||| ||| || ||||||||||    
T  7428963 tataaatcacatacatcatttattgaatgaatcta-aaatataaatttt 7429010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 24820368 - 24820333
Alignment:
Q  14 atataaatcacatacatcatttattgaatgaaccta 49  Q
    ||||||| ||||||||||||||||||||||||||||    
T  24820368 atataaaccacatacatcatttattgaatgaaccta 24820333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 42149198 - 42149164
Alignment:
Q  12 taatataaatcacatacatcatttattgaatgaac 46  Q
    ||||||||||||||||||||||| |||||||||||    
T  42149198 taatataaatcacatacatcattaattgaatgaac 42149164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 19293088 - 19293051
Alignment:
Q  12 taatataaatcacatacatcatttattgaatgaaccta 49  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  19293088 taatataaaccacatacatcattgattgaatgaaccta 19293051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 7428955 - 7428927
Alignment:
Q  21 tcacatacatcatttattgaatgaaccta 49  Q
    |||||||||||||||||||||||||||||    
T  7428955 tcacatacatcatttattgaatgaaccta 7428927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 34540733 - 34540769
Alignment:
Q  12 taatataaatcacatacatcatttattgaatgaacct 48  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  34540733 taatataaaccacatacatcatttattaaatgaacct 34540769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 100
Target Start/End: Complemental strand, 36058799 - 36058767
Alignment:
Q  68 taaattttgtttataatagtgatcagatgtata 100  Q
    |||||||||||||||||||||||||| ||||||    
T  36058799 taaattttgtttataatagtgatcaggtgtata 36058767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 18488594 - 18488559
Alignment:
Q  10 tttaatataaatcacatacatcatttattgaatgaa 45  Q
    ||||||||| ||||||||||||||||||||||||||    
T  18488594 tttaatatagatcacatacatcatttattgaatgaa 18488559  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 6462776 - 6462747
Alignment:
Q  20 atcacatacatcatttattgaatgaaccta 49  Q
    ||||||||||||||||||||||||||||||    
T  6462776 atcacatacatcatttattgaatgaaccta 6462747  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 54787054 - 54787017
Alignment:
Q  12 taatataaatcacatacatcatttattgaatgaaccta 49  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  54787054 taatataaaccacatacatcattgattgaatgaaccta 54787017  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 55501274 - 55501237
Alignment:
Q  12 taatataaatcacatacatcatttattgaatgaaccta 49  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  55501274 taatataaaccacatacatcattaattgaatgaaccta 55501237  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 21152657 - 21152623
Alignment:
Q  15 tataaatcacatacatcatttattgaatgaaccta 49  Q
    |||||||||||||||||||| ||||||||||||||    
T  21152657 tataaatcacatacatcattaattgaatgaaccta 21152623  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 21159792 - 21159758
Alignment:
Q  15 tataaatcacatacatcatttattgaatgaaccta 49  Q
    |||||||||||||||||||| ||||||||||||||    
T  21159792 tataaatcacatacatcattaattgaatgaaccta 21159758  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 21163599 - 21163565
Alignment:
Q  15 tataaatcacatacatcatttattgaatgaaccta 49  Q
    |||||||||||||||||||| ||||||||||||||    
T  21163599 tataaatcacatacatcattaattgaatgaaccta 21163565  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 52
Target Start/End: Complemental strand, 6271984 - 6271955
Alignment:
Q  23 acatacatcatttattgaatgaacctacaa 52  Q
    ||||||||||||||||||||||||||||||    
T  6271984 acatacatcatttattgaatgaacctacaa 6271955  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 9005015 - 9005052
Alignment:
Q  12 taatataaatcacatacatcatttattgaatgaaccta 49  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  9005015 taatataaatcacatacattattaattgaatgaaccta 9005052  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 10495283 - 10495250
Alignment:
Q  12 taatataaatcacatacatcatttattgaatgaa 45  Q
    ||||||||| ||||||||||||||||||||||||    
T  10495283 taatataaaccacatacatcatttattgaatgaa 10495250  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 12165352 - 12165389
Alignment:
Q  12 taatataaatcacatacatcatttattgaatgaaccta 49  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  12165352 taatataaatcatatacatcattaattgaatgaaccta 12165389  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 15966715 - 15966678
Alignment:
Q  12 taatataaatcacatacatcatttattgaatgaaccta 49  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  15966715 taatataaaccacatacatcattaattgaatgaaccta 15966678  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 17096511 - 17096548
Alignment:
Q  12 taatataaatcacatacatcatttattgaatgaaccta 49  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  17096511 taatataaaccacatacatcattgattgaatgaaccta 17096548  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 36137083 - 36137120
Alignment:
Q  12 taatataaatcacatacatcatttattgaatgaaccta 49  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  36137083 taatttaaatcacatacatcattaattgaatgaaccta 36137120  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 47011315 - 47011349
Alignment:
Q  15 tataaatcacatacatcatttattgaatgaaccta 49  Q
    |||||||||||||||||||| ||||||||||||||    
T  47011315 tataaatcacatacatcattaattgaatgaaccta 47011349  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 14214605 - 14214634
Alignment:
Q  20 atcacatacatcatttattgaatgaaccta 49  Q
    ||||||||||||||||||||||||||||||    
T  14214605 atcacatacatcatttattgaatgaaccta 14214634  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 34662477 - 34662440
Alignment:
Q  12 taatataaatcacatacatcatttattgaatgaaccta 49  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  34662477 taatataaatcacatacatcattaaatgaatgaaccta 34662440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 35050004 - 35049967
Alignment:
Q  12 taatataaatcacatacatcatttattgaatgaaccta 49  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  35050004 taatatagatcacatacatcattaattgaatgaaccta 35049967  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 48605138 - 48605175
Alignment:
Q  12 taatataaatcacatacatcatttattgaatgaaccta 49  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  48605138 taatatgaatcacatacatcattaattgaatgaaccta 48605175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 52923399 - 52923428
Alignment:
Q  20 atcacatacatcatttattgaatgaaccta 49  Q
    ||||||||||||||||||||||||||||||    
T  52923399 atcacatacatcatttattgaatgaaccta 52923428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 25547537 - 25547573
Alignment:
Q  10 tttaatataaatcacatacatcatttattgaatgaac 46  Q
    ||||||||| ||||||||||| |||||||||||||||    
T  25547537 tttaatatatatcacatacattatttattgaatgaac 25547573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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