View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14435_low_82 (Length: 249)
Name: NF14435_low_82
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_low_82 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 10979143 - 10978931
Alignment:
| Q |
20 |
cttcaatggataaagtgttggagatgcttgaagaagaagatggggacttgcaaattcctaataagccttacttttgtctacaagatccaccagtagagga |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
10979143 |
cttcaatggataaagtgttggagatgcttgaagaagaagatggggacttgcaaattcctaataagccttacttttgtttacaagatccaccagtagagga |
10979044 |
T |
|
| Q |
120 |
tgttggagatgattataatagaaactcatggagttcgtatggtacatcagttagtgattccaagggaccaacctgatctctttttggttcttggttgaat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10979043 |
tgttggagatgattataatagaaactcatggagttcgtatggtacatcagttagtgattccaagggaccaacctgatctctttttggttcttggttgaat |
10978944 |
T |
|
| Q |
220 |
tacatatcatatt |
232 |
Q |
| |
|
||||||||||||| |
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|
| T |
10978943 |
tacatatcatatt |
10978931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 10903248 - 10903031
Alignment:
| Q |
20 |
cttcaatggataaagtgttggagatgcttgaagaagaagatggggacttgcaaattcctaataagccttacttttgtctacaagatccaccagtagagga |
119 |
Q |
| |
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|||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| || || |
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| T |
10903248 |
cttcaatggataaagttttggagatgcttgaaaaagaagatggggacttacaaattcctaataagccttacttttgtccacaagatccaccaacagcaga |
10903149 |
T |
|
| Q |
120 |
tgttggagatgattataatagaaactcatggagttcgtatggtacatcagttagtgattccaagggaccaacctgatctctttttggttcttggttgaat |
219 |
Q |
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|
|||||||||||| ||||||| |||||||||| ||| |||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
10903148 |
cgttggagatgataataatagcaactcatggacttcctatggtacatcaattagtgatcccaagggaccaacctaatctctttttggttcttggctgaat |
10903049 |
T |
|
| Q |
220 |
tacatatcatattcttcg |
237 |
Q |
| |
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||||||||||||| |||| |
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| T |
10903048 |
tacatatcatattgttcg |
10903031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 10932789 - 10932584
Alignment:
| Q |
20 |
cttcaatggataaagtgtt-ggagatgcttgaagaagaagatggggacttgcaaattcctaataagccttacttttgtctacaagatccaccagtagagg |
118 |
Q |
| |
|
|||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10932789 |
cttcaatggaaaaagttttaggagatgcttgaagaagaagatggggacttgcaaattcctaataagccttacttttgtccacaagatccaccagtagagg |
10932690 |
T |
|
| Q |
119 |
atgttggagatgattataatagaaactcatggagttcgtatggtacatcagttagtgattccaagggaccaacctgatctctttttggttcttggttgaa |
218 |
Q |
| |
|
||||||||||| || || ||| |||||||||| ||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
10932689 |
atgttggagataatagtagtagcaactcatggacttcctatggtacatcagttagtgatcccaagggaccaacctaatctctttttggttcttggttgaa |
10932590 |
T |
|
| Q |
219 |
ttacat |
224 |
Q |
| |
|
||||| |
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|
| T |
10932589 |
gtacat |
10932584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 10914408 - 10914204
Alignment:
| Q |
20 |
cttcaatggataaagtgttggagatgcttgaagaagaagatggggacttgcaaattcctaataagccttacttttgtctacaagatccaccagtagagga |
119 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||| || || |
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|
| T |
10914408 |
cttcaatggaaaaagttttggagatgcttgaagaagaagatggagacttgcaaattcctaataagccttatttttgtccacaagatccaccaacagcaga |
10914309 |
T |
|
| Q |
120 |
tgttggagatgattataatagaaactcatggagttcgtatggtacatcagttagtgattccaagggaccaacctgatctctttttggttcttggttgaat |
219 |
Q |
| |
|
||||||||||||| || ||| || ||||||| ||| |||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
10914308 |
tgttggagatgataattgtagcaattcatggacttcttatggtacatcagttagttatcccaagggaccaacctgatctctttctggttcttggttgaat |
10914209 |
T |
|
| Q |
220 |
tacat |
224 |
Q |
| |
|
||||| |
|
|
| T |
10914208 |
tacat |
10914204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 11028900 - 11029070
Alignment:
| Q |
20 |
cttcaatggataaagtgttggagatgcttgaagaagaagatggggacttgcaaattcctaataagccttacttttgtctacaagatccaccagtagagga |
119 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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|
| T |
11028900 |
cttcaatggataaagttttggagatgcttgaagaagaagatggagacttgcaaattcctaataagccttacttttgtccgcaagatccactagtagagga |
11028999 |
T |
|
| Q |
120 |
tgttggagatgattataatagaaactcatggagttcgtatggtacatcagttagtgattccaagggaccaa |
190 |
Q |
| |
|
|||||||| ||| ||| ||| |||||||||| ||| ||||||||||||||||| ||| ||||| |||||| |
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|
| T |
11029000 |
tgttggagtcgataatagtagcaactcatggacttcctatggtacatcagttagcgatcccaagtgaccaa |
11029070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 11010709 - 11010507
Alignment:
| Q |
20 |
cttcaatggataaagtgttggagatgcttgaagaagaagatggggacttgcaaattcctaataagccttacttttgtctacaagatccaccagtagagga |
119 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||| ||| ||| |
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|
| T |
11010709 |
cttcaatggataaagttttggagatgcttgaagaagaagatggagacttgcagattcctaataagccttacttttgtccacaagattcaccaatagcgga |
11010610 |
T |
|
| Q |
120 |
tgttggagatgattataatagaaactcatggagttcgtatggtacatcagttagtgattccaagggaccaacctgatctctttttggttcttggttgaat |
219 |
Q |
| |
|
||| ||| | ||| |||||||||| ||| |||||||||||||||||| |||||||||||||| |||||||| |||||||||| | |||||| |
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|
| T |
11010609 |
tgt---------ttacagtagcaactcatggacttccgatggtacatcagttagtggttccaagggaccaaactgatctc-ttttggttctcgtttgaat |
11010520 |
T |
|
| Q |
220 |
tacatatcatatt |
232 |
Q |
| |
|
||||||||||||| |
|
|
| T |
11010519 |
tacatatcatatt |
11010507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 11005313 - 11005503
Alignment:
| Q |
20 |
cttcaatggataaagtgttggagatgcttgaagaagaagatggggacttgcaaattcctaataagccttacttttgtctacaagatccaccagtagagga |
119 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| || |||||||| ||||| ||||| |
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|
| T |
11005313 |
cttcaatggataaagtgattgagatgcttgaagaagaagatggggatttgcaaatgcctaataagccttacctttatccacaagatctaccagctgagga |
11005412 |
T |
|
| Q |
120 |
tgttggagatgattataatagaaactcatggagttcgtatggtacatcagttagtgattccaagggaccaacctgatctctttttggttct |
210 |
Q |
| |
|
| || |||||| | ||| ||||| || ||| ||| | || ||||||| | | ||||| || || |||||||||||||| | |||||||| |
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|
| T |
11005413 |
ttttagagatggtaatactagaagttcttggtcttcctctgatacatcaataaatgatttcatggaaccaacctgatctcgtgttggttct |
11005503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 10993997 - 10994109
Alignment:
| Q |
20 |
cttcaatggataaagtgttggagatgcttgaagaagaagatggggacttgcaaattcctaataagccttacttttgtctacaagatccaccagtagagga |
119 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| || ||||||| ||||| ||| || |
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|
| T |
10993997 |
cttcaatggataaagtgattgagatgcttgaagaagaagatggggatttgcaaatgcctaataagccttacctttatccacaagatataccagcagacga |
10994096 |
T |
|
| Q |
120 |
tgttggagatgat |
132 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
10994097 |
tgttagagatgat |
10994109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 10901472 - 10901350
Alignment:
| Q |
20 |
cttcaatggataaagtgttggagatgcttgaagaagaagatggggacttgcaaattcctaataagccttacttttgtctacaagatccaccagtagagga |
119 |
Q |
| |
|
||||||||||||||||| | |||||||||| | ||||||||||||| |||||||| ||||| ||||||||| ||| || |||||||| ||||| ||||| |
|
|
| T |
10901472 |
cttcaatggataaagtgattgagatgcttgcataagaagatggggatttgcaaatgcctaagaagccttacctttatccacaagatctaccagctgagga |
10901373 |
T |
|
| Q |
120 |
tgttggagatgattataatagaa |
142 |
Q |
| |
|
| || |||||||| ||| ||||| |
|
|
| T |
10901372 |
tttttgagatgataatactagaa |
10901350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 11032997 - 11032915
Alignment:
| Q |
23 |
caatggataaagtgttggagatgcttgaagaagaagatggggacttgcaaattcctaataagccttacttttgtctacaagat |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||| ||| || | |||||||| |
|
|
| T |
11032997 |
caatggataaagtgttggagatgcttgaagaagaagatgaagatttgcaaatgcctaataagcctgactattatgtacaagat |
11032915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 11007544 - 11007480
Alignment:
| Q |
23 |
caatggataaagtgttggagatgcttgaagaagaagatggggacttgcaaattcctaataagcct |
87 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || |||||||| |||||| ||||| |
|
|
| T |
11007544 |
caatggataaagtgttggagatgcttgaagaagaagatgaagatttgcaaatgcctaatcagcct |
11007480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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