View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_low_83 (Length: 249)
Name: NF14435_low_83
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_low_83 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 21665854 - 21666086
Alignment:
| Q |
1 |
agtcacaagtaaaattgatatctatagtcctttggtgttattctaaaatttgctcataacacaagcacataaataccacacttacctattatactgtact |
100 |
Q |
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| T |
21665854 |
agtcacaagtaaaattgatatctatagtcctttggtgttattctaaaatttgctcataacacaagcacataaataccacacttacctattatattgtact |
21665953 |
T |
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| Q |
101 |
gaaatgcataatattacaaattctgtgttttggttccatcacttaagcaaaataaaagaaaatcgattgcacaaaaaatcttcttgaagaaatactagcc |
200 |
Q |
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| T |
21665954 |
gaaatgcataatattacaaattctgtgttttggttccatcacttaagcaaaataaaagaaaatcgattgcacaaaaaatcttcttgaagaaatactagcc |
21666053 |
T |
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| Q |
201 |
ccaaagaatttacctttttctcaagtccacctt |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
21666054 |
ccaaagaatttacctttttctcaagtccacctt |
21666086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 54710374 - 54710606
Alignment:
| Q |
1 |
agtcacaagtaaaattgatatctatagtcctttggtgttattctaaaatttgctcataacacaagcacataaataccacacttacctattatactgtact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
54710374 |
agtcacaagtaaaattgatatctatagtcctttggtgttattctaaaatttgctcataacacaagcacataaataccacacttacctattatattgtact |
54710473 |
T |
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| Q |
101 |
gaaatgcataatattacaaattctgtgttttggttccatcacttaagcaaaataaaagaaaatcgattgcacaaaaaatcttcttgaagaaatactagcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54710474 |
gaaatgcataatattacaaattctgtgttttggttccatcacttaagcaaaataaaagaaaatcgattgcacaaaaaatcttcttgaagaaatactagcc |
54710573 |
T |
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| Q |
201 |
ccaaagaatttacctttttctcaagtccacctt |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
54710574 |
ccaaagaatttacctttttctcaagtccacctt |
54710606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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