View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_low_87 (Length: 242)
Name: NF14435_low_87
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_low_87 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 33721260 - 33721471
Alignment:
| Q |
13 |
aatatctgtttggtggatggttannnnnnnngcagtatggacagggtgaaaagagacttgtattgcttctctggtttcttttctcattccttccaccatt |
112 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33721260 |
aatatctgttttgtggatggttattttttttgcagtatggacagggtgaaaagagacttgtattgcttctctggtttcttttctcattccttccaccatt |
33721359 |
T |
|
| Q |
113 |
gtagttctttaatttagcttgtaatgctccttccactaaaccttcagaccttatcattcttctttgttcttgggcctgcatagcatttacaagctctgcc |
212 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33721360 |
gtagttctttaatttagcttgtaatgctccttccactaaaccttcagaccttatcattcttctttgttcttgggcctgcatagcatttacaagctctgcc |
33721459 |
T |
|
| Q |
213 |
acggtaagcttt |
224 |
Q |
| |
|
|||||||||||| |
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|
| T |
33721460 |
acggtaagcttt |
33721471 |
T |
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Back To:
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Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 44 - 224
Target Start/End: Complemental strand, 627083 - 626903
Alignment:
| Q |
44 |
gcagtatggacagggtgaaaagagacttgtattgcttctctggtttcttttctcattccttccaccattgtagttctttaatttagcttgtaatgctcct |
143 |
Q |
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|||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
627083 |
gcagtatggatagggtgaaaagagacttatattgctgctctggtttcttttctcattccttccaccattgtagttctttaatttagcttgtaatgctcct |
626984 |
T |
|
| Q |
144 |
tccactaaaccttcagaccttatcattcttctttgttcttgggcctgcatagcatttacaagctctgccacggtaagcttt |
224 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
626983 |
tccactgaaccttcagaccttatcattcttctttgttcttggccctgcatagcatttacaagctctcccacggtaagcttt |
626903 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 120 - 224
Target Start/End: Complemental strand, 29868483 - 29868379
Alignment:
| Q |
120 |
tttaatttagcttgtaatgctccttccactaaaccttcagaccttatcattcttctttgttcttgggcctgcatagcatttacaagctctgccacggtaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29868483 |
tttaatttagcttgtaatgctccttccactgatccttcagaccttatcattcttctttgttcttgggcctgcatagcatttacaagctccgccacggtaa |
29868384 |
T |
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| Q |
220 |
gcttt |
224 |
Q |
| |
|
||||| |
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|
| T |
29868383 |
gcttt |
29868379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 44 - 224
Target Start/End: Original strand, 28698504 - 28698684
Alignment:
| Q |
44 |
gcagtatggacagggtgaaaagagacttgtattgcttctctggtttcttttctcattccttccaccattgtagttctttaatttagcttgtaatgctcct |
143 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28698504 |
gcagaatggacaaggtgaaaagagacttgtattgctgctctggtttcttttctcattccttccaccattgtagttctttaatttagcttgtaatgctcct |
28698603 |
T |
|
| Q |
144 |
tccactaaaccttcagaccttatcattcttctttgttcttgggcctgcatagcatttacaagctctgccacggtaagcttt |
224 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
28698604 |
tccactgaaccttcagaccttatcattcttctttgttcttgggcctgcatagcatttacaagctctcccaacgtaagcttt |
28698684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 120 - 224
Target Start/End: Original strand, 21027047 - 21027151
Alignment:
| Q |
120 |
tttaatttagcttgtaatgctccttccactaaaccttcagaccttatcattcttctttgttcttgggcctgcatagcatttacaagctctgccacggtaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21027047 |
tttaatttagcttgtaatgctccttccactgaaccttcagaccttatcattcttctttgttcttgggcctgcatagcatttacaagctccgccacggtaa |
21027146 |
T |
|
| Q |
220 |
gcttt |
224 |
Q |
| |
|
||||| |
|
|
| T |
21027147 |
gcttt |
21027151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 120 - 224
Target Start/End: Complemental strand, 19965949 - 19965845
Alignment:
| Q |
120 |
tttaatttagcttgtaatgctccttccactaaaccttcagaccttatcattcttctttgttcttgggcctgcatagcatttacaagctctgccacggtaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
19965949 |
tttaatttagcttgtaatgctccttccactgaaccttcagaccttatcattcttctttgttcttgggtctgcatagcatttacaagctccgccacggtaa |
19965850 |
T |
|
| Q |
220 |
gcttt |
224 |
Q |
| |
|
||||| |
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|
| T |
19965849 |
gcttt |
19965845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 120 - 224
Target Start/End: Original strand, 20785866 - 20785970
Alignment:
| Q |
120 |
tttaatttagcttgtaatgctccttccactaaaccttcagaccttatcattcttctttgttcttgggcctgcatagcatttacaagctctgccacggtaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
20785866 |
tttaatttagcttgtaatgctccttccactgaaccttcagaccttatcattcttctttgttcttgggcctgcatagcatttacaagctccgccacggtaa |
20785965 |
T |
|
| Q |
220 |
gcttt |
224 |
Q |
| |
|
||||| |
|
|
| T |
20785966 |
gcttt |
20785970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 120 - 224
Target Start/End: Complemental strand, 29470195 - 29470091
Alignment:
| Q |
120 |
tttaatttagcttgtaatgctccttccactaaaccttcagaccttatcattcttctttgttcttgggcctgcatagcatttacaagctctgccacggtaa |
219 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29470195 |
tttaatttagcttgcaatgctccttccactgaaccttcagaccttatcgttcttctttgttcttgggcctgcatagcatttacaagctccgccacggtaa |
29470096 |
T |
|
| Q |
220 |
gcttt |
224 |
Q |
| |
|
||||| |
|
|
| T |
29470095 |
gcttt |
29470091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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