View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_low_88 (Length: 240)
Name: NF14435_low_88
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_low_88 |
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Alignment Details
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 131 - 223
Target Start/End: Original strand, 35259034 - 35259126
Alignment:
| Q |
131 |
gttcacaactcttttgttgaatttgaactatctcattgaaaatgcagaaatgtcctctggaaggagtatcgtttgtcataaatgaaacatttc |
223 |
Q |
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| T |
35259034 |
gttcacaactcttttgttgaatttgaactatctcattgaaaatgcagaaatgtcctctggaaggagtatcgtttgtcataaatgaaacatttc |
35259126 |
T |
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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 35256467 - 35256529
Alignment:
| Q |
158 |
ctatctcattgaaaatgcagaaatgtcctc--tggaaggagtatcgtttgtcataaatgaaac |
218 |
Q |
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| T |
35256467 |
ctatctcattgaaaatgcagaaatgtcctctgtggaaggagcatcgttcgtcataaatgaaac |
35256529 |
T |
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