View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14436_high_1 (Length: 433)
Name: NF14436_high_1
Description: NF14436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14436_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 49819297 - 49819702
Alignment:
| Q |
1 |
acggacttgatggattaaaggtaggatgaaacaaatgaggtgccattacattactaatggagctaagtcgctccttcaaagacataattcaagaacgaga |
100 |
Q |
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| T |
49819297 |
acggacttgatggattaaaggtaggatgaaacaaatgaggtgccattacattactaatggagctaagtcgctccttcaaagacataattcaagaacgaga |
49819396 |
T |
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| Q |
101 |
cttgttgctaaaggtcgagtgagatgaaaatagtgcatcacgaacttcgggatcacacgggccaagaaagaccatgtagagaaatttgtactgtaacaat |
200 |
Q |
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| T |
49819397 |
cttgttgctaaaggctcaatgaaatgaaaatagtgcatcacgaacttcgggatcacacgagccaagaaagaccatgaagagaaatttgtactgtaacaat |
49819496 |
T |
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| Q |
201 |
tagaagtttctttatcctttcatgacatggtcaacaagatggcgagcaacaagaagatagtggatctgttttgacgtaccaaacaaaatagttgataggg |
300 |
Q |
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| T |
49819497 |
tagaagtttctttatcctttcatgacatggtcaacaagatgtcgagcaacaagaagatagtggatctgttttgacgtaccaaacaaaatagttgatagag |
49819596 |
T |
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| Q |
301 |
ttaagattgataggtagttgagtggtgactttttactctatgagatgtttttgtgctgaagaggttggatcgttgtaagatgtggtttgatcaaccatgg |
400 |
Q |
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| T |
49819597 |
ttaagattgataggtagttgagtggtgactttttactctatgagatgtttttgtgctgaagaggttggatcgttgtaagatgtggtttgatcaaccatgg |
49819696 |
T |
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| Q |
401 |
tggatt |
406 |
Q |
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| T |
49819697 |
tggatt |
49819702 |
T |
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