View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14436_high_2 (Length: 354)

Name: NF14436_high_2
Description: NF14436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14436_high_2
NF14436_high_2
[»] chr3 (21 HSPs)
chr3 (1-345)||(840547-840893)
chr3 (46-164)||(21974307-21974425)
chr3 (46-164)||(21996738-21996856)
chr3 (46-164)||(22157416-22157534)
chr3 (45-164)||(29014690-29014809)
chr3 (45-164)||(49040844-49040963)
chr3 (45-164)||(32677477-32677596)
chr3 (45-164)||(36737834-36737953)
chr3 (39-164)||(1351990-1352115)
chr3 (45-164)||(18997125-18997244)
chr3 (45-164)||(18999664-18999783)
chr3 (45-164)||(29371538-29371657)
chr3 (45-164)||(39518565-39518684)
chr3 (45-164)||(41349371-41349490)
chr3 (42-164)||(39528907-39529029)
chr3 (45-164)||(38855475-38855594)
chr3 (45-164)||(39806979-39807098)
chr3 (45-164)||(32840106-32840226)
chr3 (73-153)||(55367721-55367801)
chr3 (65-132)||(28228625-28228695)
chr3 (1-45)||(34805762-34805806)
[»] chr4 (17 HSPs)
chr4 (191-321)||(50234952-50235081)
chr4 (45-164)||(26025528-26025647)
chr4 (46-164)||(39482020-39482138)
chr4 (45-164)||(30469213-30469332)
chr4 (48-164)||(8955779-8955895)
chr4 (63-164)||(36971206-36971307)
chr4 (71-163)||(33108924-33109016)
chr4 (45-164)||(45590900-45591019)
chr4 (198-265)||(6071852-6071919)
chr4 (45-164)||(34334490-34334613)
chr4 (45-153)||(49162257-49162365)
chr4 (45-164)||(18835865-18835984)
chr4 (63-164)||(33288422-33288524)
chr4 (56-132)||(50774069-50774145)
chr4 (1-46)||(13557448-13557493)
chr4 (1-46)||(48007277-48007322)
chr4 (1-46)||(55157627-55157672)
[»] chr8 (14 HSPs)
chr8 (45-164)||(32183481-32183600)
chr8 (44-164)||(33837728-33837848)
chr8 (40-164)||(45334271-45334395)
chr8 (45-164)||(2508796-2508915)
chr8 (45-164)||(13469508-13469626)
chr8 (191-265)||(4905804-4905878)
chr8 (45-153)||(28379116-28379224)
chr8 (44-164)||(38495471-38495591)
chr8 (42-125)||(9740183-9740266)
chr8 (37-163)||(2626230-2626355)
chr8 (45-164)||(25106369-25106488)
chr8 (198-265)||(26723448-26723515)
chr8 (56-103)||(29598605-29598652)
chr8 (1-43)||(8051921-8051963)
[»] chr7 (28 HSPs)
chr7 (42-163)||(48049161-48049283)
chr7 (61-164)||(12252230-12252333)
chr7 (45-150)||(46690035-46690140)
chr7 (45-151)||(9215463-9215569)
chr7 (46-163)||(31858093-31858210)
chr7 (57-164)||(5514937-5515044)
chr7 (56-161)||(33974655-33974760)
chr7 (45-153)||(6389893-6390001)
chr7 (45-164)||(17904321-17904440)
chr7 (45-164)||(22753068-22753187)
chr7 (45-164)||(26770337-26770456)
chr7 (45-164)||(46467335-46467454)
chr7 (44-164)||(6387691-6387811)
chr7 (45-164)||(9332478-9332598)
chr7 (45-164)||(29890826-29890945)
chr7 (63-164)||(29427182-29427283)
chr7 (45-164)||(4405267-4405386)
chr7 (45-164)||(31502653-31502773)
chr7 (44-164)||(37179330-37179451)
chr7 (62-144)||(7839234-7839316)
chr7 (1-46)||(4125481-4125526)
chr7 (1-46)||(9691071-9691116)
chr7 (65-114)||(19523813-19523862)
chr7 (63-151)||(33379007-33379095)
chr7 (65-164)||(9876421-9876520)
chr7 (82-164)||(41921892-41921973)
chr7 (45-77)||(12252069-12252101)
chr7 (45-77)||(31858339-31858371)
[»] chr2 (9 HSPs)
chr2 (45-164)||(21727830-21727949)
chr2 (45-164)||(15233913-15234032)
chr2 (63-164)||(35792925-35793026)
chr2 (44-164)||(41252573-41252694)
chr2 (44-164)||(43040848-43040968)
chr2 (45-164)||(44104546-44104666)
chr2 (56-163)||(41643053-41643160)
chr2 (64-164)||(31903400-31903499)
chr2 (1-46)||(32447903-32447948)
[»] chr1 (16 HSPs)
chr1 (45-164)||(37875727-37875845)
chr1 (46-164)||(1236071-1236189)
chr1 (44-164)||(4055642-4055762)
chr1 (50-164)||(49112282-49112393)
chr1 (45-164)||(47669277-47669396)
chr1 (45-164)||(10737701-10737820)
chr1 (45-164)||(39241310-39241429)
chr1 (45-164)||(46220417-46220536)
chr1 (47-164)||(3384597-3384714)
chr1 (56-164)||(4817427-4817535)
chr1 (48-164)||(9831661-9831777)
chr1 (45-164)||(48564975-48565094)
chr1 (45-164)||(8889600-8889720)
chr1 (89-164)||(26842598-26842673)
chr1 (65-125)||(18127047-18127107)
chr1 (1-46)||(52053850-52053895)
[»] chr6 (10 HSPs)
chr6 (45-164)||(29452542-29452661)
chr6 (45-150)||(18742119-18742223)
chr6 (45-164)||(2543239-2543358)
chr6 (64-164)||(7156256-7156356)
chr6 (45-153)||(32274603-32274711)
chr6 (45-164)||(27312114-27312235)
chr6 (45-118)||(786525-786597)
chr6 (45-164)||(31170990-31171109)
chr6 (63-145)||(5008308-5008390)
chr6 (45-109)||(8504733-8504797)
[»] chr5 (16 HSPs)
chr5 (45-164)||(29875112-29875231)
chr5 (45-164)||(4695162-4695281)
chr5 (57-164)||(4939680-4939787)
chr5 (44-164)||(12398945-12399065)
chr5 (56-132)||(19574876-19574952)
chr5 (45-164)||(22645909-22646028)
chr5 (45-164)||(23090456-23090575)
chr5 (45-164)||(34208696-34208815)
chr5 (56-164)||(22528163-22528270)
chr5 (63-164)||(4145852-4145953)
chr5 (41-114)||(42757801-42757874)
chr5 (56-164)||(3077755-3077863)
chr5 (56-164)||(12096214-12096321)
chr5 (73-149)||(594124-594200)
chr5 (56-162)||(32144285-32144392)
chr5 (1-46)||(8383971-8384016)
[»] scaffold0103 (1 HSPs)
scaffold0103 (63-164)||(44778-44877)
[»] scaffold0276 (1 HSPs)
scaffold0276 (1-46)||(2092-2137)


Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 840893 - 840547
Alignment:
Q  1 tattagaataaaaaatattcactgtgtaaattattaatatattgtactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  840893 tattagaataaaaaatattcactgtgtaaattattaatatattgtactccctccattttttatcttttgatgttttaactcttggcacaagtcttaagaa 840794  T
Q  101 ataattaaagtatagaaaaatttgtatgttttggactaaaatgtccttatttaggattaaattcccaaatgtcacgactcctttaataattttagggtaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  840793 ataattaaagtatagaaaaatttgtatgttttggactaaaatgtccttatttaggattaaattcccaaatgtcacaactcctttaataattttagggtaa 840694  T
Q  201 ttatccatgaacacccttttttcataccactttacatacacccttcattatccaatcacacactgtcatgtggtcaaaatctgtgactcatcccatcccg 300  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  840693 ttatccatgaacacccttttttcataccactttacatacacctttcattatccaatcacacactgccatgcggtcaaaatctgtgactcatcccatcccg 840594  T
Q  301 ccaaaacatttcccctc--tctccacagtctctacaaccatctctgc 345  Q
    |||||||||||||||||  ||||||||||||||||| ||||||||||    
T  840593 ccaaaacatttcccctctctctccacagtctctacagccatctctgc 840547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 46 - 164
Target Start/End: Complemental strand, 21974425 - 21974307
Alignment:
Q  46 actccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtc 145  Q
    ||||||||||||| || |||||||||||||||||||||||||||||| ||||| | ||||||||||||| ||| |||||| | |||| ||||||||| ||    
T  21974425 actccctccatttattttcttttgatgttttaactcttgacacaagttttaaggagtaattaaagtatataaatatttgtctatttttgactaaaatatc 21974326  T
Q  146 cttatttaggattaaattc 164  Q
    ||||||||| |||||||||    
T  21974325 cttatttagtattaaattc 21974307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 46 - 164
Target Start/End: Complemental strand, 21996856 - 21996738
Alignment:
Q  46 actccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtc 145  Q
    ||||||||||||| || |||||||||||||||||||||||||||||| ||||| | ||||||||||||| ||| |||||| | |||| ||||||||| ||    
T  21996856 actccctccatttattttcttttgatgttttaactcttgacacaagttttaaggagtaattaaagtatataaatatttgtctatttttgactaaaatatc 21996757  T
Q  146 cttatttaggattaaattc 164  Q
    ||||||||| |||||||||    
T  21996756 cttatttagtattaaattc 21996738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 46 - 164
Target Start/End: Complemental strand, 22157534 - 22157416
Alignment:
Q  46 actccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtc 145  Q
    ||||||||||||| || ||||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||| |||||| | |||| ||||||||||||    
T  22157534 actccctccatttattttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaatatttgtctatttttgactaaaatgtc 22157435  T
Q  146 cttatttaggattaaattc 164  Q
    ||||||||| |||||||||    
T  22157434 cttatttagtattaaattc 22157416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 29014690 - 29014809
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||||||  || ||||||||||||||| |||||||||||||| ||||||| ||||||||||||| ||| |||||| ||||||  ||| ||||||    
T  29014690 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaagaagtaattaaagtatataaacatttgtgtgttttttacttaaatgt 29014789  T
Q  145 ccttatttaggattaaattc 164  Q
    |||||||||  |||||||||    
T  29014790 ccttatttatcattaaattc 29014809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 49040844 - 49040963
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    ||||||||||  ||||||||||||||||||||| ||| || |||||||||| || | |||||||  |||||||| ||||||||||||| |||||||||||    
T  49040844 tactccctccgctttttatcttttgatgttttagctcctggcacaagtcttgaggagtaattaagttatagaaatatttgtatgttttagactaaaatgt 49040943  T
Q  145 ccttatttaggattaaattc 164  Q
    |||| |||| ||||||||||    
T  49040944 ccttgtttatgattaaattc 49040963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 32677477 - 32677596
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||||||  || ||||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||| |||||| ||||||  ||| ||||||    
T  32677477 tactccctccattcattttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtgttttttacttaaatgt 32677576  T
Q  145 ccttatttaggattaaattc 164  Q
    |||||||||  |||||||||    
T  32677577 ccttatttatcattaaattc 32677596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 36737834 - 36737953
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||||||  || ||||||||||||||| |||||||||||||| ||||| ||||||||||||||| ||| |||||| ||||||  ||| |||| |    
T  36737834 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggaataattaaagtatataaacatttgtgtgttttttacttaaatat 36737933  T
Q  145 ccttatttaggattaaattc 164  Q
    |||||||||  |||||||||    
T  36737934 ccttatttatcattaaattc 36737953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 164
Target Start/End: Original strand, 1351990 - 1352115
Alignment:
Q  39 atattgtactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggacta 138  Q
    |||| ||||||||||||||  || ||||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||| |||||| | ||||  |||     
T  1351990 atatagtactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaatatttgtgtattttttactt 1352089  T
Q  139 aaatgtccttatttaggattaaattc 164  Q
    |||||||||||||||  |||||||||    
T  1352090 aaatgtccttatttatcattaaattc 1352115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 18997244 - 18997125
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||||||  || ||||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||| ||||||  |||||  ||| ||||||    
T  18997244 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgcgttttttacttaaatgt 18997145  T
Q  145 ccttatttaggattaaattc 164  Q
    |||||||||  |||||||||    
T  18997144 ccttatttatcattaaattc 18997125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 18999783 - 18999664
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||||||  || ||||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||| ||||||  |||||  ||| ||||||    
T  18999783 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgcgttttttacttaaatgt 18999684  T
Q  145 ccttatttaggattaaattc 164  Q
    |||||||||  |||||||||    
T  18999683 ccttatttatcattaaattc 18999664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 29371538 - 29371657
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||||||  || ||||||||||||||| |||||||||||| | ||||| | ||||||||||||| ||| |||||| ||||||  ||| ||||||    
T  29371538 tactccctccattcattttcttttgatgttttagctcttgacacaaattttaaggagtaattaaagtatataaacatttgtgtgttttttacttaaatgt 29371637  T
Q  145 ccttatttaggattaaattc 164  Q
    |||||||||  |||||||||    
T  29371638 ccttatttatcattaaattc 29371657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 39518684 - 39518565
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||||||  || ||||||||||||||| |||||||||||||| ||||  | ||||||||||||| ||| |||||| ||||||  ||| ||||||    
T  39518684 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaatgagtaattaaagtatataaacatttgtgtgttttttacttaaatgt 39518585  T
Q  145 ccttatttaggattaaattc 164  Q
    |||||||||  |||||||||    
T  39518584 ccttatttatcattaaattc 39518565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 41349371 - 41349490
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||||||  || ||||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||| |||||| | ||||  ||| ||||||    
T  41349371 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtattttttacttaaatgt 41349470  T
Q  145 ccttatttaggattaaattc 164  Q
    |||||||||  |||||||||    
T  41349471 ccttatttatcattaaattc 41349490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 42 - 164
Target Start/End: Complemental strand, 39529029 - 39528907
Alignment:
Q  42 ttgtactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaa 141  Q
    ||||||||||||||||  || ||||||||||||||| || ||||||||||| ||||| | ||||||||||||| ||| |||||| | ||||  ||| |||    
T  39529029 ttgtactccctccattccttttcttttgatgttttagcttttgacacaagttttaaggagtaattaaagtatataaacatttgtgtattttttacttaaa 39528930  T
Q  142 tgtccttatttaggattaaattc 164  Q
    ||||||||||||  |||||||||    
T  39528929 tgtccttatttatcattaaattc 39528907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 38855594 - 38855475
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||||||  || ||||||||||||||| || ||| ||||||| ||||| | |||||||| |||| ||| |||||| || |||  ||||||||||    
T  38855594 tactccctccattccttttcttttgatgttttagctattggcacaagttttaaggagtaattaaaatatataaatatttgtgtgatttttactaaaatgt 38855495  T
Q  145 ccttatttaggattaaattc 164  Q
    |||||||||  |||||||||    
T  38855494 ccttatttatcattaaattc 38855475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 39806979 - 39807098
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||| ||||  || ||||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||| |||||| | ||||  ||| ||||||    
T  39806979 tactcccttcattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaatatttgtgtattttttacttaaatgt 39807078  T
Q  145 ccttatttaggattaaattc 164  Q
     ||||||||  |||||||||    
T  39807079 tcttatttatcattaaattc 39807098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 32840226 - 32840106
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatg-ttttggactaaaatg 143  Q
    |||||||||||||  || ||||||||| ||||| |||||||||||||| ||||| | ||||||||||||| ||| |||||| || ||||  ||| |||||    
T  32840226 tactccctccattcattttcttttgatattttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtgtttttttacttaaatg 32840127  T
Q  144 tccttatttaggattaaattc 164  Q
    | ||||||||  |||||||||    
T  32840126 ttcttatttatcattaaattc 32840106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 153
Target Start/End: Complemental strand, 55367801 - 55367721
Alignment:
Q  73 ttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtccttattta 153  Q
    ||||| ||||||| |||||| ||||| | ||||||||||||| ||| |||||| | ||||  ||| |||||||||||||||    
T  55367801 ttttagctcttgatacaagttttaaggagtaattaaagtatataaatatttgtgtattttttacttaaatgtccttattta 55367721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 132
Target Start/End: Complemental strand, 28228695 - 28228625
Alignment:
Q  65 ttttgatgttttaactcttgacacaagtcttaaga---aataattaaagtatagaaaaatttgtatgtttt 132  Q
    ||||||||||||  |||||||||||||| ||||||   ||| ||||||||||| ||| |||||| ||||||    
T  28228695 ttttgatgttttggctcttgacacaagttttaagaagtaattattaaagtatataaacatttgtgtgtttt 28228625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 34805762 - 34805806
Alignment:
Q  1 tattagaataaaaaatattcactgtgtaaattattaatatattgt 45  Q
    |||||||||| |||||| ||| ||| |||||||||||||||||||    
T  34805762 tattagaatataaaatactcattgtataaattattaatatattgt 34805806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 6e-56; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 191 - 321
Target Start/End: Original strand, 50234952 - 50235081
Alignment:
Q  191 tttagggtaattatccatgaacacccttttttcataccactttacatacacccttcattatccaatcacacactgtcatgtggtcaaaatctgtgactca 290  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  50234952 tttaggataattatccatgaacaccctttt-tcataccactttacatacacccttcattatccaatcacacactgccatgtggtcaaaatctttgactca 50235050  T
Q  291 tcccatcccgccaaaacatttcccctctctc 321  Q
    |||||||||||||||||||||||||||||||    
T  50235051 tcccatcccgccaaaacatttcccctctctc 50235081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 26025528 - 26025647
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||| |||||||||||||||||||||| |||||| ||||||||||| | | ||||||||||||||||| |||||||||||||||||||||||||    
T  26025528 tactccctccgttttttatcttttgatgttttagctcttggcacaagtcttagggagtaattaaagtatagaaatatttgtatgttttggactaaaatgt 26025627  T
Q  145 ccttatttaggattaaattc 164  Q
    ||||||||| ||||||||||    
T  26025628 ccttatttatgattaaattc 26025647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 46 - 164
Target Start/End: Complemental strand, 39482138 - 39482020
Alignment:
Q  46 actccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtc 145  Q
    ||||||||||||| || ||||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||| |||||| | |||| ||||||||||||    
T  39482138 actccctccatttcttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaatatttgtgtatttttgactaaaatgtc 39482039  T
Q  146 cttatttaggattaaattc 164  Q
    ||||||||| |||||||||    
T  39482038 cttatttagtattaaattc 39482020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 30469213 - 30469332
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||| ||||| || |||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||| |||||| | ||||  ||| ||||||    
T  30469213 tactcccttcatttcttttcttttgatgttttaactcttgacacaagttttaagaagtaattaaagtatataaatatttgtgtattttttacttaaatgt 30469312  T
Q  145 ccttatttaggattaaattc 164  Q
    | || ||||  |||||||||    
T  30469313 cattgtttatcattaaattc 30469332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 164
Target Start/End: Original strand, 8955779 - 8955895
Alignment:
Q  48 tccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtcct 147  Q
    ||||||||||  || ||||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||| |||||| | ||||  ||| |||||||||    
T  8955779 tccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtattttttacttaaatgtcct 8955878  T
Q  148 tatttaggattaaattc 164  Q
    ||||||  |||||||||    
T  8955879 tatttatcattaaattc 8955895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 36971307 - 36971206
Alignment:
Q  63 tcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtccttatttaggattaaat 162  Q
    ||||||||||||||| || ||||||||||| ||||||| ||||||||||||| ||| |||||| ||||||  ||| |||| ||||||||||  |||||||    
T  36971307 tcttttgatgttttagcttttgacacaagttttaagaagtaattaaagtatataaacatttgtgtgttttttacttaaatatccttatttatcattaaat 36971208  T
Q  163 tc 164  Q
    ||    
T  36971207 tc 36971206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 71 - 163
Target Start/End: Original strand, 33108924 - 33109016
Alignment:
Q  71 tgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtccttatttaggattaaatt 163  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||| |||| |||||||||  ||||||  | ||||||||  ||||||||    
T  33108924 tgttttaactcttgacacaagtcttaagaaataattaaattatataaatatttctatgttttgagctaaaaaattcttatttataattaaatt 33109016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 45591019 - 45590900
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||||||  || ||||||||||||||| ||||||||| ||||  |||| | ||||||||||||| ||| |||||| ||||||  ||| ||||||    
T  45591019 tactccctccattcattttcttttgatgttttagctcttgacataagttgtaaggagtaattaaagtatataaacatttgtgtgttttttacttaaatgt 45590920  T
Q  145 ccttatttaggattaaattc 164  Q
     ||||||||  |||||||||    
T  45590919 tcttatttatcattaaattc 45590900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 198 - 265
Target Start/End: Complemental strand, 6071919 - 6071852
Alignment:
Q  198 taattatccatgaacacccttttttcataccactttacatacacccttcattatccaatcacacactg 265  Q
    ||||||||||| |||||||| |||||||||||||||| | ||||| |||||||| |||||||||||||    
T  6071919 taattatccataaacaccctcttttcataccactttatacacacctttcattattcaatcacacactg 6071852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 34334613 - 34334490
Alignment:
Q  45 tactccctccattt-tttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtat---agaaaaatttgtatgttttggactaaa 140  Q
    |||||||||||||  ||| |||||||||| || ||||||| |||||||||||||| | ||||||||||||   | ||| |||||||||||||  ||| ||    
T  34334613 tactccctccattcctttttcttttgatgattaaactcttaacacaagtcttaaggagtaattaaagtatataataaacatttgtatgttttttacttaa 34334514  T
Q  141 atgtccttatttaggattaaattc 164  Q
    ||||| |||||||  |||||||||    
T  34334513 atgtctttatttatcattaaattc 34334490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 153
Target Start/End: Complemental strand, 49162365 - 49162257
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||||||   | ||||||||||||||| || ||| ||||||| ||||  | ||||||||||||| ||| |||||| || |||  ||||||||||    
T  49162365 tactccctccattccctttcttttgatgttttagctattggcacaagttttaaagagtaattaaagtatataaatatttgtgtgatttttactaaaatgt 49162266  T
Q  145 ccttattta 153  Q
    |||||||||    
T  49162265 ccttattta 49162257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 18835984 - 18835865
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||| ||||||| || | ||||||||||||| || ||  ||||| | ||||| | |||||||| |||| ||| |||||| ||||||  ||||||||||    
T  18835984 tactccttccatttattttattttgatgttttatcttttcgcacaaattttaaggagtaattaaaatatataaatatttgtgtgtttttaactaaaatgt 18835885  T
Q  145 ccttatttaggattaaattc 164  Q
    |||||||||  |||||||||    
T  18835884 ccttatttatcattaaattc 18835865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 33288422 - 33288524
Alignment:
Q  63 tcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtat-gttttggactaaaatgtccttatttaggattaaa 161  Q
    ||||||||||||||| || ||||||||||| ||||| | ||||||||||||| ||| |||||| |  ||||  ||| |||||||||||||||  ||||||    
T  33288422 tcttttgatgttttagctattgacacaagttttaaggagtaattaaagtatataaacatttgtgtatttttttacttaaatgtccttatttatcattaaa 33288521  T
Q  162 ttc 164  Q
    |||    
T  33288522 ttc 33288524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 50774069 - 50774145
Alignment:
Q  56 ttttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgtttt 132  Q
    |||||| | |||| |||||||| |||||||||||||| ||||| | ||||||||||||| ||| |||||| ||||||    
T  50774069 ttttttttttttttatgttttagctcttgacacaagttttaaggagtaattaaagtatataaatatttgtgtgtttt 50774145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 13557448 - 13557493
Alignment:
Q  1 tattagaataaaaaatattcactgtgtaaattattaatatattgta 46  Q
    |||||||||| |||||||||| |||||||||||||| |||||||||    
T  13557448 tattagaatataaaatattcattgtgtaaattattagtatattgta 13557493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 48007322 - 48007277
Alignment:
Q  1 tattagaataaaaaatattcactgtgtaaattattaatatattgta 46  Q
    |||||||||| |||||||||| ||| ||||||||||||||||||||    
T  48007322 tattagaatataaaatattcattgtataaattattaatatattgta 48007277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 55157627 - 55157672
Alignment:
Q  1 tattagaataaaaaatattcactgtgtaaattattaatatattgta 46  Q
    |||||||||| |||||||||| ||| |||||| |||||||||||||    
T  55157627 tattagaatataaaatattcattgtataaattgttaatatattgta 55157672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 32183481 - 32183600
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||| ||||||| |||||||||||||||||||||||||    
T  32183481 tactccctccattttttatcttttgatgttttagctcttggcacaagtcttaaggagtaattaaagcatagaaatatttgtatgttttggactaaaatgt 32183580  T
Q  145 ccttatttaggattaaattc 164  Q
    ||||||||| ||||||||||    
T  32183581 ccttatttatgattaaattc 32183600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 44 - 164
Target Start/End: Original strand, 33837728 - 33837848
Alignment:
Q  44 gtactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatg 143  Q
    ||||||||||||||  || ||||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||| |||||| | ||||  ||| |||||    
T  33837728 gtactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtattttttacttaaatg 33837827  T
Q  144 tccttatttaggattaaattc 164  Q
    ||||||||||  |||||||||    
T  33837828 tccttatttatcattaaattc 33837848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 40 - 164
Target Start/End: Original strand, 45334271 - 45334395
Alignment:
Q  40 tattgtactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaa 139  Q
    |||| |||||||||||||  || ||||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||| |||||| | ||||  ||| |    
T  45334271 tattttactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtattttttactta 45334370  T
Q  140 aatgtccttatttaggattaaattc 164  Q
    ||||||||||||||  |||||||||    
T  45334371 aatgtccttatttatcattaaattc 45334395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 2508796 - 2508915
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||| || |||| || ||||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||| |||||| | ||||  ||| ||||||    
T  2508796 tactccatcaatttcttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtattttttacttaaatgt 2508895  T
Q  145 ccttatttaggattaaattc 164  Q
    |||||||||  |||||||||    
T  2508896 ccttatttatcattaaattc 2508915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 13469508 - 13469626
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||| ||||||  || |||||||||||||||||||||||||||||| ||||| | ||||||||||||| ||| |||||| ||||||   || ||||||    
T  13469508 tactccttccattccttttcttttgatgttttaactcttgacacaagttttaaggagtaattaaagtatataaatatttgtgtgtttt-tccttaaatgt 13469606  T
Q  145 ccttatttaggattaaattc 164  Q
    |||||||||  |||||||||    
T  13469607 ccttatttatcattaaattc 13469626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 191 - 265
Target Start/End: Complemental strand, 4905878 - 4905804
Alignment:
Q  191 tttagggtaattatccatgaacacccttttttcataccactttacatacacccttcattatccaatcacacactg 265  Q
    |||||| ||||||| |||||||||||||||||||||||||| || | |||||||||||||| |||||||||||||    
T  4905878 tttaggctaattattcatgaacacccttttttcataccactctatacacacccttcattattcaatcacacactg 4905804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 45 - 153
Target Start/End: Complemental strand, 28379224 - 28379116
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||||||  || ||||||||||||||| |||||||||||||| ||||| | | ||||||||||| ||| ||||||  |||||  ||| ||||||    
T  28379224 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtgattaaagtatataaacatttgtgcgttttttacttaaatgt 28379125  T
Q  145 ccttattta 153  Q
    |||||||||    
T  28379124 ccttattta 28379116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 44 - 164
Target Start/End: Original strand, 38495471 - 38495591
Alignment:
Q  44 gtactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatg 143  Q
    ||||||||||||||  || ||||||||||||||| ||||||||| |||| ||||| | |||||||| |||| ||| |||||| ||||||  ||| ||||     
T  38495471 gtactccctccattcattttcttttgatgttttagctcttgacataagttttaaggagtaattaaaatatataaacatttgtgtgttttttacttaaata 38495570  T
Q  144 tccttatttaggattaaattc 164  Q
    ||||||||||  |||||||||    
T  38495571 tccttatttatcattaaattc 38495591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 9740266 - 9740183
Alignment:
Q  42 ttgtactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgt 125  Q
    ||||||||||||||||  || |||||||||||||||||||||||||||||| ||| | | ||||||||||||| ||| ||||||    
T  9740266 ttgtactccctccattccttttcttttgatgttttaactcttgacacaagttttagggagtaattaaagtatataaacatttgt 9740183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 37 - 163
Target Start/End: Original strand, 2626230 - 2626355
Alignment:
Q  37 atatattgtactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggac 136  Q
    ||||| |||||||  |||||  ||| ||||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||| |||||| ||||||  |     
T  2626230 atataatgtactctatccatcctttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtgtttt-tat 2626328  T
Q  137 taaaatgtccttatttaggattaaatt 163  Q
    | |||||||||||||||  ||||||||    
T  2626329 ttaaatgtccttatttatcattaaatt 2626355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 25106488 - 25106369
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||||||  || ||||||||||||||| || ||||||||||| ||||| | ||||||||||||| ||| | |||| ||||||  | | |||| |    
T  25106488 tactccctccattccttttcttttgatgttttagcttttgacacaagttttaaggagtaattaaagtatataaacacttgtgtgttttttatttaaattt 25106389  T
Q  145 ccttatttaggattaaattc 164  Q
    |||||||||  |||||||||    
T  25106388 ccttatttatcattaaattc 25106369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 265
Target Start/End: Original strand, 26723448 - 26723515
Alignment:
Q  198 taattatccatgaacacccttttttcataccactttacatacacccttcattatccaatcacacactg 265  Q
    |||||||||||||||||||||||||| ||| ||| ||   ||| |||||||||| |||||||||||||    
T  26723448 taattatccatgaacacccttttttcctacgactctatgcacatccttcattattcaatcacacactg 26723515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 29598652 - 29598605
Alignment:
Q  56 ttttttatcttttgatgttttaactcttgacacaagtcttaagaaata 103  Q
    |||||||||||||||||||||||||||| ||  |||||||||| ||||    
T  29598652 ttttttatcttttgatgttttaactcttaacttaagtcttaaggaata 29598605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 8051963 - 8051921
Alignment:
Q  1 tattagaataaaaaatattcactgtgtaaattattaatatatt 43  Q
    |||||||||| |||||||||| ||| |||||||||||||||||    
T  8051963 tattagaatataaaatattcattgtataaattattaatatatt 8051921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 42 - 163
Target Start/End: Complemental strand, 48049283 - 48049161
Alignment:
Q  42 ttgtactccctccatttttt-atcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaa 140  Q
    ||||||||||||| |||||| |||||||||||||||| |||||| ||||||||||||| | ||||||||||||||||| ||||||||||||| |||||||    
T  48049283 ttgtactccctccgtttttttatcttttgatgttttagctcttggcacaagtcttaagtagtaattaaagtatagaaatatttgtatgtttttgactaaa 48049184  T
Q  141 atgtccttatttaggattaaatt 163  Q
    ||||||||||||| |||||||||    
T  48049183 atgtccttatttatgattaaatt 48049161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 61 - 164
Target Start/End: Complemental strand, 12252333 - 12252230
Alignment:
Q  61 tatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtccttatttaggattaa 160  Q
    ||||||||||||||||||| |||| ||||||||||||| | ||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  12252333 tatcttttgatgttttaacacttggcacaagtcttaaggagtaattaatgtatagaaatatttgtatgttttggactaaaatgtccttatttatgattaa 12252234  T
Q  161 attc 164  Q
    ||||    
T  12252233 attc 12252230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 45 - 150
Target Start/End: Complemental strand, 46690140 - 46690035
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||| ||||||| | ||||||||||||| ||| |||||||||||||||||||||||||    
T  46690140 tactccctccattttttatcttttgatgttttagctcttggcacaaatcttaaggagtaattaaagtatataaatatttgtatgttttggactaaaatgt 46690041  T
Q  145 ccttat 150  Q
    | ||||    
T  46690040 cattat 46690035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 9215463 - 9215569
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    ||||||||| ||||||||||||||||||||||| ||||||  |||| ||||||||| ||||||||||| | ||| |||||||||||||||||||||||||    
T  9215463 tactccctctattttttatcttttgatgttttagctcttggtacaaatcttaagaagtaattaaagtacataaatatttgtatgttttggactaaaatgt 9215562  T
Q  145 ccttatt 151  Q
    |||||||    
T  9215563 ccttatt 9215569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 46 - 163
Target Start/End: Original strand, 31858093 - 31858210
Alignment:
Q  46 actccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtc 145  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| | ||||||||| ||| ||| ||||||||||||| || |||||| ||    
T  31858093 actccttccgttttttatcttttgatgttttaactcttgacacaaatcttaaggagtaattaaagaatataaacatttgtatgtttttgattaaaatatc 31858192  T
Q  146 cttatttaggattaaatt 163  Q
    |||||||| |||||||||    
T  31858193 cttatttatgattaaatt 31858210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 5515044 - 5514937
Alignment:
Q  57 tttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtccttatttagga 156  Q
    ||||||||||||||||| ||| |||||||||||||||||||  |||||||||| |||| ||| |||||||||||||| |||||||||| |||||||| ||    
T  5515044 tttttatcttttgatgtattagctcttgacacaagtcttaatgaataattaaaatataaaaatatttgtatgttttgtactaaaatgttcttatttatga 5514945  T
Q  157 ttaaattc 164  Q
    ||||||||    
T  5514944 ttaaattc 5514937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 56 - 161
Target Start/End: Complemental strand, 33974760 - 33974655
Alignment:
Q  56 ttttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtccttatttagg 155  Q
    ||||||||||||||| |||||| |||||| ||||||||||||| | ||||||||||||||||| ||| |||||| |||||||||||| |||||||||| |    
T  33974760 ttttttatcttttgacgttttagctcttggcacaagtcttaaggagtaattaaagtatagaaatattggtatgtattggactaaaatatccttatttatg 33974661  T
Q  156 attaaa 161  Q
    ||||||    
T  33974660 attaaa 33974655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 45 - 153
Target Start/End: Complemental strand, 6390001 - 6389893
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    ||||||||| ||| ||| |||||||||||||||||||||||||||||| ||||||| || |||||||||| ||| |||||| ||||||  ||| ||||||    
T  6390001 tactccctcaattctttttcttttgatgttttaactcttgacacaagttttaagaagtagttaaagtatataaatatttgtgtgttttttacttaaatgt 6389902  T
Q  145 ccttattta 153  Q
    |||||||||    
T  6389901 ccttattta 6389893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 17904440 - 17904321
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||||||  || ||||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||| |||||| ||||||  ||| ||||||    
T  17904440 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtgttttttacttaaatgt 17904341  T
Q  145 ccttatttaggattaaattc 164  Q
    |||||||||  |||||||||    
T  17904340 ccttatttatcattaaattc 17904321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 22753068 - 22753187
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||||||| |||| |||||||||||||  ||| ||||||||||||||  | ||||| ||| ||| ||| ||||| |||||||||||||||||||    
T  22753068 tactccctccatttcttatattttgatgttttagttctggacacaagtcttaatgagtaattgaagcataaaaatatttgaatgttttggactaaaatgt 22753167  T
Q  145 ccttatttaggattaaattc 164  Q
    | |||||||  |||||||||    
T  22753168 ctttatttatcattaaattc 22753187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 26770456 - 26770337
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||||||  || |||||||||||||||| ||||||||||||| ||||| | ||||||||||||| ||| |||||| ||||||  ||| |||| |    
T  26770456 tactccctccattcattttcttttgatgttttaattcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtgttttttacttaaatat 26770357  T
Q  145 ccttatttaggattaaattc 164  Q
    |||||||||  |||||||||    
T  26770356 ccttatttatcattaaattc 26770337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 46467335 - 46467454
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||||||  || |||||||||||||||||||||||||||| | ||||| | ||||||||||||| ||| |||||| ||||||  ||| ||||||    
T  46467335 tactccctccattccttttcttttgatgttttaactcttgacacaaattttaaggagtaattaaagtatataaacatttgtgtgttttttacttaaatgt 46467434  T
Q  145 ccttatttaggattaaattc 164  Q
     ||||||||  |||||||||    
T  46467435 tcttatttatcattaaattc 46467454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 164
Target Start/End: Original strand, 6387691 - 6387811
Alignment:
Q  44 gtactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatg 143  Q
    ||||| ||||||||  || ||||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||| |||||| | ||||  ||| |||||    
T  6387691 gtacttcctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtattttttacttaaatg 6387790  T
Q  144 tccttatttaggattaaattc 164  Q
    ||||||||||  |||||||||    
T  6387791 tccttatttatcattaaattc 6387811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 9332598 - 9332478
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtat-gttttggactaaaatg 143  Q
    |||||||||||||| || ||||||||| ||||| ||||| |||||||| ||||| | ||||||||||||| ||| |||||| |  ||||  |||||||||    
T  9332598 tactccctccatttcttttcttttgatattttagctcttaacacaagttttaaggagtaattaaagtatataaatatttgtgtatttttttactaaaatg 9332499  T
Q  144 tccttatttaggattaaattc 164  Q
    ||||||||||| |||||||||    
T  9332498 tccttatttagtattaaattc 9332478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 29890826 - 29890945
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||||||  || ||||||||||||||| || ||||||||||| ||||| | ||||||||||||| ||| | |||| ||||||  ||| ||||||    
T  29890826 tactccctccattccttttcttttgatgttttagcttttgacacaagttttaaggagtaattaaagtatataaacacttgtgtgttttttacttaaatgt 29890925  T
Q  145 ccttatttaggattaaattc 164  Q
    |||||||||  |||||||||    
T  29890926 ccttatttatcattaaattc 29890945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 29427182 - 29427283
Alignment:
Q  63 tcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtccttatttaggattaaat 162  Q
    ||||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||| |||||| ||||||  ||| ||||||| |||||||  |||||||    
T  29427182 tcttttgatgttttacctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtgttttttacttaaatgtctttatttatcattaaat 29427281  T
Q  163 tc 164  Q
    ||    
T  29427282 tc 29427283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 4405386 - 4405267
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||||||  || ||||||||||||||| || ||| ||||||| ||||| | |||||||| |||| ||| |||||| || |||  ||||||||||    
T  4405386 tactccctccattccttttcttttgatgttttagctattggcacaagttttaaggagtaattaaaatatataaatatttgtgtgatttttactaaaatgt 4405287  T
Q  145 ccttatttaggattaaattc 164  Q
    |||||||||  |||||||||    
T  4405286 ccttatttatcattaaattc 4405267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 31502653 - 31502773
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatg--ttttggactaaaat 142  Q
    ||||||||||||| ||| ||||||||||||||| |||||||  ||||| ||||| | ||||||||||||| ||| |||||| ||  ||||  ||| ||||    
T  31502653 tactccctccattcttt-tcttttgatgttttagctcttgatgcaagttttaaggagtaattaaagtatataaacatttgtgtgttttttttacttaaat 31502751  T
Q  143 gtccttatttaggattaaattc 164  Q
    |||||||||||  |||||||||    
T  31502752 gtccttatttatcattaaattc 31502773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 44 - 164
Target Start/End: Original strand, 37179330 - 37179451
Alignment:
Q  44 gtactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatg-ttttggactaaaat 142  Q
    ||||||||||||||  || ||||||||||||||| |||||||||||||| ||||| | |||| |||||||| | | |||||| || ||||  ||| ||||    
T  37179330 gtactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaatgaaagtatatagacatttgtgtgtttttttacttaaat 37179429  T
Q  143 gtccttatttaggattaaattc 164  Q
    |||||| ||||  |||||||||    
T  37179430 gtccttgtttatcattaaattc 37179451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 144
Target Start/End: Complemental strand, 7839316 - 7839234
Alignment:
Q  62 atcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||| ||||| || ||  ||||||| ||||| | ||||||||||||| ||| |||||||||||||| | ||||||||    
T  7839316 atcttttgatattttagctgttatcacaagtattaaggagtaattaaagtatataaatatttgtatgttttgaaataaaatgt 7839234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 4125481 - 4125526
Alignment:
Q  1 tattagaataaaaaatattcactgtgtaaattattaatatattgta 46  Q
    |||||||||| |||||||||| ||| ||||||||||||||||||||    
T  4125481 tattagaatataaaatattcattgtataaattattaatatattgta 4125526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 9691071 - 9691116
Alignment:
Q  1 tattagaataaaaaatattcactgtgtaaattattaatatattgta 46  Q
    |||||||||| |||||||||| |||||||||||||| |||||||||    
T  9691071 tattagaatataaaatattcattgtgtaaattattagtatattgta 9691116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 19523813 - 19523862
Alignment:
Q  65 ttttgatgttttaactcttgacacaagtcttaagaaataattaaagtata 114  Q
    ||||||||||||| |||||||||||||| ||||| | |||||||||||||    
T  19523813 ttttgatgttttagctcttgacacaagttttaaggagtaattaaagtata 19523862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 151
Target Start/End: Original strand, 33379007 - 33379095
Alignment:
Q  63 tcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtccttatt 151  Q
    |||||||||||||||| |  |  ||||||| ||||||||| |||||||||||| || | ||| | | ||| ||||||||||||||||||    
T  33379007 tcttttgatgttttaagtgattgcacaagtattaagaaatcattaaagtataggaatagttggaaggtttagactaaaatgtccttatt 33379095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 164
Target Start/End: Complemental strand, 9876520 - 9876421
Alignment:
Q  65 ttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtccttatttaggattaaattc 164  Q
    |||| |||||||| || ||| || |||| ||||| | |||||||| |||| ||| |||||| || |||  |||||||||||||||||||  |||||||||    
T  9876520 tttttatgttttagctattggcataagttttaaggagtaattaaaatatataaatatttgtgtgatttttactaaaatgtccttatttatcattaaattc 9876421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 41921892 - 41921973
Alignment:
Q  82 ttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtccttatttaggattaaattc 164  Q
    ||||||||||| ||||| | ||||||||||||| ||| |||||| | ||||  ||| |||||||||||||||  |||||||||    
T  41921892 ttgacacaagttttaaggagtaattaaagtatataaacatttgtgt-ttttttacttaaatgtccttatttatcattaaattc 41921973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 12252069 - 12252101
Alignment:
Q  45 tactccctccattttttatcttttgatgtttta 77  Q
    ||||||||||||||||| |||||||||||||||    
T  12252069 tactccctccattttttttcttttgatgtttta 12252101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 31858371 - 31858339
Alignment:
Q  45 tactccctccattttttatcttttgatgtttta 77  Q
    ||||||||||||||||| |||||||||||||||    
T  31858371 tactccctccattttttttcttttgatgtttta 31858339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 21727949 - 21727830
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||| |||||||||||||||||||||| |||||| ||||||||||||| | ||||| ||||||| ||| |||||||||||||||||||||||||    
T  21727949 tactccctccgttttttatcttttgatgttttagctcttggcacaagtcttaaggagtaattgaagtatataaatatttgtatgttttggactaaaatgt 21727850  T
Q  145 ccttatttaggattaaattc 164  Q
    |||| |||| ||||||||||    
T  21727849 ccttgtttatgattaaattc 21727830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 15234032 - 15233913
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||||||  || ||||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||| |||||||| ||||  ||| ||||||    
T  15234032 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtatattttttacttaaatgt 15233933  T
Q  145 ccttatttaggattaaattc 164  Q
    |||||||||  |||||||||    
T  15233932 ccttatttatcattaaattc 15233913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 35792925 - 35793026
Alignment:
Q  63 tcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtccttatttaggattaaat 162  Q
    ||||||||||||||||||||||||| |||| ||||| | ||||||||||||| ||| |||||| ||||||  ||| ||||||||| |||||  |||||||    
T  35792925 tcttttgatgttttaactcttgacataagttttaaggagtaattaaagtatataaacatttgtgtgttttttacttaaatgtcctgatttatcattaaat 35793024  T
Q  163 tc 164  Q
    ||    
T  35793025 tc 35793026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 164
Target Start/End: Complemental strand, 41252694 - 41252573
Alignment:
Q  44 gtactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatg-ttttggactaaaat 142  Q
    |||||| |||||||  || ||||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||| |||||| || ||||  ||| ||||    
T  41252694 gtactctctccattcattttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtgtttttttacttaaat 41252595  T
Q  143 gtccttatttaggattaaattc 164  Q
    |||||||||||  |||||||||    
T  41252594 gtccttatttatcattaaattc 41252573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 44 - 164
Target Start/End: Original strand, 43040848 - 43040968
Alignment:
Q  44 gtactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatg 143  Q
    ||||||||||||||  || ||||||||||||||| || ||| ||||||| ||||| | |||||||| |||| ||| |||||| || |||  |||||||||    
T  43040848 gtactccctccattccttttcttttgatgttttagctattggcacaagttttaaggagtaattaaaatatataaatatttgtgtgatttttactaaaatg 43040947  T
Q  144 tccttatttaggattaaattc 164  Q
    ||||||||||  |||||||||    
T  43040948 tccttatttatcattaaattc 43040968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 44104546 - 44104666
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatg-ttttggactaaaatg 143  Q
    |||||||||||||  || |||||||||||||||||| |||||| |||| ||||| | ||||||||||||| ||| |||||| || ||||  ||| |||||    
T  44104546 tactccctccattccttttcttttgatgttttaacttttgacataagttttaaggagtaattaaagtatataaacatttgtgtgtttttttacttaaatg 44104645  T
Q  144 tccttatttaggattaaattc 164  Q
    || |||||||  |||||||||    
T  44104646 tctttatttatcattaaattc 44104666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 56 - 163
Target Start/End: Complemental strand, 41643160 - 41643053
Alignment:
Q  56 ttttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtccttatttagg 155  Q
    |||||| |||||||||||||||| ||||| ||||  | ||||  | ||||||||||||| ||| |||||| ||||||  |||||||||||||||||||      
T  41643160 ttttttttcttttgatgttttaattcttggcacacattttaaagagtaattaaagtatataaatatttgtgtgttttttactaaaatgtccttatttatc 41643061  T
Q  156 attaaatt 163  Q
    ||||||||    
T  41643060 attaaatt 41643053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 164
Target Start/End: Original strand, 31903400 - 31903499
Alignment:
Q  64 cttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtccttatttaggattaaatt 163  Q
    |||||||||||||| || ||| ||| | | ||||| | ||||||||||||| || | ||||| |||||| ||| ||||||||||||||||  ||||||||    
T  31903400 cttttgatgttttagcttttggcacgacttttaaggagtaattaaagtatataata-tttgtgtgtttttgaccaaaatgtccttatttatcattaaatt 31903498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 32447903 - 32447948
Alignment:
Q  1 tattagaataaaaaatattcactgtgtaaattattaatatattgta 46  Q
    |||||||||| |||||||||| ||| || |||||||||||||||||    
T  32447903 tattagaatataaaatattcattgtatagattattaatatattgta 32447948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 37875727 - 37875845
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||||||| || ||||||||||||||| |||||| ||||||||||||| ||||||||| ||||||||| ||||||||||||| ||||||||| |    
T  37875727 tactccctccatttcttttcttttgatgttttagctcttggcacaagtcttaaggaataattaatgtatagaaatatttgtatgtttt-gactaaaatat 37875825  T
Q  145 ccttatttaggattaaattc 164  Q
    |||||||||  |||||||||    
T  37875826 ccttatttatcattaaattc 37875845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 46 - 164
Target Start/End: Original strand, 1236071 - 1236189
Alignment:
Q  46 actccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtc 145  Q
    ||||||||||||  || ||||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||| |||||| ||||||  ||| |||||||    
T  1236071 actccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtgttttttacttaaatgtc 1236170  T
Q  146 cttatttaggattaaattc 164  Q
    ||||||||  |||||||||    
T  1236171 cttatttatcattaaattc 1236189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 44 - 164
Target Start/End: Complemental strand, 4055762 - 4055642
Alignment:
Q  44 gtactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatg 143  Q
    ||||||||| | || ||| |||||||||||||||||||||||||||||| ||||| | ||||||||||||| ||| |||||| ||||||  ||| |||||    
T  4055762 gtactcccttcgttctttttcttttgatgttttaactcttgacacaagttttaaggagtaattaaagtatataaatatttgtgtgtttttcacttaaatg 4055663  T
Q  144 tccttatttaggattaaattc 164  Q
    || |||||||  |||||||||    
T  4055662 tctttatttatcattaaattc 4055642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 50 - 164
Target Start/End: Original strand, 49112282 - 49112393
Alignment:
Q  50 cctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtcctta 149  Q
    ||||||||||||||||||| ||||||||  ||||   | |||||||||  | ||||||||||||| ||| ||||||||||||||||||||||| ||||||    
T  49112282 cctccattttttatcttttcatgttttagttctt---agaagtcttaaagagtaattaaagtataaaaatatttgtatgttttggactaaaatatcctta 49112378  T
Q  150 tttaggattaaattc 164  Q
    |||| ||||||||||    
T  49112379 tttatgattaaattc 49112393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 47669396 - 47669277
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||||||  || ||||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||| |||||| | ||||  ||| ||||||    
T  47669396 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtattttttacttaaatgt 47669297  T
Q  145 ccttatttaggattaaattc 164  Q
    |||||||||  |||||||||    
T  47669296 ccttatttatcattaaattc 47669277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 10737701 - 10737820
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||||||  || ||||||||||||||| ||||||| |||||| ||||| |  |||||||||||| ||| |||||| ||||||  ||| ||||||    
T  10737701 tactccctccattccttttcttttgatgttttagctcttgatacaagttttaaggagcaattaaagtatataaatatttgtgtgttttttacttaaatgt 10737800  T
Q  145 ccttatttaggattaaattc 164  Q
    |||||||||  |||||||||    
T  10737801 ccttatttatcattaaattc 10737820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 39241429 - 39241310
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    ||||| |||||||| || ||||||||||||||| ||||||||| || | ||||||| ||||||||||||| ||| |||||| |||||| ||| ||||| |    
T  39241429 tactctctccatttcttttcttttgatgttttagctcttgacataaattttaagaagtaattaaagtatataaatatttgtgtgtttttgaccaaaatat 39241330  T
Q  145 ccttatttaggattaaattc 164  Q
     ||||||||  |||||||||    
T  39241329 tcttatttatcattaaattc 39241310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 46220536 - 46220417
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||||||  || ||||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||| |||||| | ||||  ||| || |||    
T  46220536 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtattttttacttaattgt 46220437  T
Q  145 ccttatttaggattaaattc 164  Q
    |||||||||  |||||||||    
T  46220436 ccttatttatcattaaattc 46220417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 3384597 - 3384714
Alignment:
Q  47 ctccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtcc 146  Q
    ||||||||||| ||| ||||||||||||||| |||||||||||||| ||||| | ||||||||||||| |||  ||||| ||||||  ||| ||||||      
T  3384597 ctccctccattctttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacgtttgtgtgttttttacttaaatgttt 3384696  T
Q  147 ttatttaggattaaattc 164  Q
    |||||||  |||||||||    
T  3384697 ttatttatcattaaattc 3384714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 56 - 164
Target Start/End: Complemental strand, 4817535 - 4817427
Alignment:
Q  56 ttttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtccttatttagg 155  Q
    |||||| | |||| ||||||||||||||||||||||| ||||| | ||||||||||||| ||| |||||| ||| ||  ||| |||||||||||||||      
T  4817535 ttttttttttttttatgttttaactcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtgtgttttacttaaatgtccttatttatc 4817436  T
Q  156 attaaattc 164  Q
    |||||||||    
T  4817435 attaaattc 4817427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 48 - 164
Target Start/End: Complemental strand, 9831777 - 9831661
Alignment:
Q  48 tccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtcct 147  Q
    ||||||||||  || ||||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||| |||||| | ||||  ||| |||||| ||    
T  9831777 tccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtattttttacttaaatgttct 9831678  T
Q  148 tatttaggattaaattc 164  Q
    ||||||  |||||||||    
T  9831677 tatttatcattaaattc 9831661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 48565094 - 48564975
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||||||  || ||||||||||||||  || ||||||||||| ||||| | ||||||||||||| ||| | |||| ||||||  ||| ||||||    
T  48565094 tactccctccattccttttcttttgatgttttggcttttgacacaagttttaaggagtaattaaagtatataaacacttgtgtgttttttacttaaatgt 48564995  T
Q  145 ccttatttaggattaaattc 164  Q
    |||||||||  |||||||||    
T  48564994 ccttatttatcattaaattc 48564975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 8889720 - 8889600
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatg-ttttggactaaaatg 143  Q
    |||||||||||||  || | ||||||||||||| |||||||||||||| ||||||| ||||||||||||| | | |||||| || ||||  ||| |||||    
T  8889720 tactccctccattccttttattttgatgttttagctcttgacacaagttttaagaagtaattaaagtatatatacatttgtgtgtttttttacttaaatg 8889621  T
Q  144 tccttatttaggattaaattc 164  Q
    || |||||||  |||||||||    
T  8889620 tcattatttatcattaaattc 8889600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 164
Target Start/End: Complemental strand, 26842673 - 26842598
Alignment:
Q  89 aagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtccttatttaggattaaattc 164  Q
    |||||||||| | ||||||||||||||||| || | |||||||| ||||||||| |||||||||| ||||||||||    
T  26842673 aagtcttaaggagtaattaaagtatagaaatatgtatatgttttagactaaaatatccttatttatgattaaattc 26842598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 18127107 - 18127047
Alignment:
Q  65 ttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgt 125  Q
    ||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||| ||||||    
T  18127107 ttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgt 18127047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 52053895 - 52053850
Alignment:
Q  1 tattagaataaaaaatattcactgtgtaaattattaatatattgta 46  Q
    |||||||||| |||||||||| ||| ||||||||||||||||||||    
T  52053895 tattagaatataaaatattcattgtataaattattaatatattgta 52053850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 29452542 - 29452661
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    ||||||||| |||| || |||||||||||||||||||||| ||||||| ||||| | ||||||||||||| ||| |||||| |||||| |||||||| ||    
T  29452542 tactccctctatttattttcttttgatgttttaactcttggcacaagttttaaggagtaattaaagtatataaatatttgtgtgtttttgactaaaaagt 29452641  T
Q  145 ccttatttaggattaaattc 164  Q
    | |||||||  |||||||||    
T  29452642 cattatttatcattaaattc 29452661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 150
Target Start/End: Complemental strand, 18742223 - 18742119
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||||||| || ||||||||||||||| |||||| ||||||||||||| ||||||||| ||||| ||| |||||| |||||| ||||||||| |    
T  18742223 tactccctccatttcttttcttttgatgttttacctcttggcacaagtcttaaggaataattaatgtataaaaatatttgtgtgtttt-gactaaaatat 18742125  T
Q  145 ccttat 150  Q
    ||||||    
T  18742124 ccttat 18742119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 2543358 - 2543239
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||||||  || ||||||||||||||| |||||||||||||| ||||||| ||||||||||||| ||| || ||| ||||||  ||| ||||||    
T  2543358 tactccctccattcgttttcttttgatgttttagctcttgacacaagttttaagaagtaattaaagtatataaacatctgtgtgttttttacttaaatgt 2543259  T
Q  145 ccttatttaggattaaattc 164  Q
    | |||||||  |||||||||    
T  2543258 ctttatttatcattaaattc 2543239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 164
Target Start/End: Original strand, 7156256 - 7156356
Alignment:
Q  64 cttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtccttatttaggattaaatt 163  Q
    |||||||||||||| ||||||| |||||| ||||| ||||||||||||||| ||| |||||| ||| || ||||||||| ||||||||||  ||||||||    
T  7156256 cttttgatgttttagctcttgatacaagttttaaggaataattaaagtatataaatatttgtgtgtctttgactaaaatatccttatttatcattaaatt 7156355  T
Q  164 c 164  Q
    |    
T  7156356 c 7156356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 45 - 153
Target Start/End: Complemental strand, 32274711 - 32274603
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||||||  || ||||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||| |||||| | ||||  ||| ||||||    
T  32274711 tactccctccattcattttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtattttttacttaaatgt 32274612  T
Q  145 ccttattta 153  Q
    || ||||||    
T  32274611 ccgtattta 32274603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 27312114 - 27312235
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactctt-gacacaagtcttaagaaataattaaagtatagaaaaatttgtatg-ttttggactaaaat 142  Q
    |||||||||||||  || ||||||||||||||| ||||| ||||||||| ||||| | ||||||||||||| ||| |||||| || ||||  ||| ||||    
T  27312114 tactccctccattccttttcttttgatgttttagctcttagacacaagttttaaggagtaattaaagtatataaatatttgtgtgtttttttacttaaat 27312213  T
Q  143 gtccttatttaggattaaattc 164  Q
    |||||||||||  |||||||||    
T  27312214 gtccttatttatcattaaattc 27312235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 786525 - 786597
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaa 118  Q
    |||||||| ||||||||||||||| ||| ||||  ||||| ||||||||||||| |||||||||||||||||||    
T  786525 tactcccttcattttttatcttttaatgctttagttcttg-cacaagtcttaaggaataattaaagtatagaaa 786597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 31170990 - 31171109
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||||||| || ||||||||| |||||  ||||  ||||| | ||||| | ||||||||||||| ||| |||||| | |||| || |||||| |    
T  31170990 tactccctccatttcttttcttttgatattttagttcttagcacaaattttaaggagtaattaaagtatataaatatttgtgtatttttgattaaaatat 31171089  T
Q  145 ccttatttaggattaaattc 164  Q
    |||||||||  |||||||||    
T  31171090 ccttatttatcattaaattc 31171109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 63 - 145
Target Start/End: Complemental strand, 5008390 - 5008308
Alignment:
Q  63 tcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtc 145  Q
    ||||||||||||||| ||||| |||||||| ||||| | ||||||||||||| ||| |||||| ||||||  ||| |||||||    
T  5008390 tcttttgatgttttagctcttaacacaagttttaaggagtaattaaagtatataaatatttgtgtgttttttacttaaatgtc 5008308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 8504733 - 8504797
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaa 109  Q
    |||||||||||||  || ||||||||||||||| |||||||||||||| ||||| | ||||||||    
T  8504733 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaa 8504797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 29875231 - 29875112
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||||||  || ||||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||| |||||| ||||||  ||| ||||||    
T  29875231 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtgttttttacttaaatgt 29875132  T
Q  145 ccttatttaggattaaattc 164  Q
    |||||||||  |||||||||    
T  29875131 ccttatttatcattaaattc 29875112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 4695162 - 4695281
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||||||| || |||||||||||| || |||||||||||||| ||||| | ||||||||||||| ||| |||||| | ||||  ||| ||||||    
T  4695162 tactccctccatttcttttcttttgatgttatagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtattttttacttaaatgt 4695261  T
Q  145 ccttatttaggattaaattc 164  Q
    |||||||||  |||||||||    
T  4695262 ccttatttattattaaattc 4695281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 4939787 - 4939680
Alignment:
Q  57 tttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtccttatttagga 156  Q
    ||||||||||||||||||||||||||||||| ||||||||| || |||||||| |||| ||  |||||||||||||||| ||||| | | |||||||  |    
T  4939787 tttttatcttttgatgttttaactcttgacataagtcttaataagtaattaaaatatataagtatttgtatgttttggattaaaaagcctttatttataa 4939688  T
Q  157 ttaaattc 164  Q
    ||||||||    
T  4939687 ttaaattc 4939680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 164
Target Start/End: Original strand, 12398945 - 12399065
Alignment:
Q  44 gtactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatg 143  Q
    ||||||||||||||  || ||||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||| |||||| | ||||  ||| |||||    
T  12398945 gtactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtattttttacttaaatg 12399044  T
Q  144 tccttatttaggattaaattc 164  Q
    | ||||||||  |||||||||    
T  12399045 ttcttatttatcattaaattc 12399065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 132
Target Start/End: Complemental strand, 19574952 - 19574876
Alignment:
Q  56 ttttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgtttt 132  Q
    |||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||| ||| |||||||| ||||    
T  19574952 ttttttattttttgatgttttaactcttggcacaagtcttaagaagtaattaaagtatataaatatttgtatttttt 19574876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 22645909 - 22646028
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    ||||||||| |||| || |||||| |||||||| |||||| ||||||| ||||| | ||||||||||||| ||| |||||| ||||||  |||||||| |    
T  22645909 tactccctcaatttcttttcttttaatgttttagctcttggcacaagttttaaggagtaattaaagtatataaatatttgtgtgttttttactaaaatat 22646008  T
Q  145 ccttatttaggattaaattc 164  Q
    |||||||||  |||||||||    
T  22646009 ccttatttatcattaaattc 22646028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 23090575 - 23090456
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||||||  || ||||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||| |||||| | ||||  ||| ||||||    
T  23090575 tactccctccattccttttcttttgatgttttacctcttgacacaagttttaaggagtaattaaagtatacaaacatttgtgtattttttacttaaatgt 23090476  T
Q  145 ccttatttaggattaaattc 164  Q
     ||||||||  |||||||||    
T  23090475 tcttatttatcattaaattc 23090456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 34208815 - 34208696
Alignment:
Q  45 tactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 144  Q
    |||||||||||||  || | ||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||| |||||| | ||||  ||| ||||||    
T  34208815 tactccctccattcctttttttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaatatttgtgtattttttacttaaatgt 34208716  T
Q  145 ccttatttaggattaaattc 164  Q
    |||||||||  |||||||||    
T  34208715 ccttatttatcattaaattc 34208696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 56 - 164
Target Start/End: Complemental strand, 22528270 - 22528163
Alignment:
Q  56 ttttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtccttatttagg 155  Q
    ||||||||| ||| ||||||||| | ||||||||||| |||||   ||||||||||||||||| |||||||||||||||| |||||| |  ||||||| |    
T  22528270 ttttttatcatttaatgttttaatttttgacacaagttttaagcg-taattaaagtatagaaatatttgtatgttttggattaaaatatttttatttatg 22528172  T
Q  156 attaaattc 164  Q
    |||||||||    
T  22528171 attaaattc 22528163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 4145953 - 4145852
Alignment:
Q  63 tcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtccttatttaggattaaat 162  Q
    |||||||||||||||  ||||||||||||| ||||| | ||||||||||||| ||| |||||| | ||||  ||| |||||||||||||||  |||||||    
T  4145953 tcttttgatgttttagttcttgacacaagttttaaggagtaattaaagtatataaatatttgtgtattttttacttaaatgtccttatttatcattaaat 4145854  T
Q  163 tc 164  Q
    ||    
T  4145853 tc 4145852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 42757801 - 42757874
Alignment:
Q  41 attgtactccctccattttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtata 114  Q
    |||||||||||||||||  || ||||||||||||||| |||||||||||||| ||||| | |||||||||||||    
T  42757801 attgtactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtata 42757874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 164
Target Start/End: Complemental strand, 3077863 - 3077755
Alignment:
Q  56 ttttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtccttatttagg 155  Q
    |||||| | |||| |||||||| |||||||||||||| ||||| | ||||||||||||| ||| |||||| | ||||  ||| |||||||||||||||      
T  3077863 ttttttttttttttatgttttagctcttgacacaagttttaaggagtaattaaagtatataaatatttgtgtattttttacttaaatgtccttatttatc 3077764  T
Q  156 attaaattc 164  Q
    |||||||||    
T  3077763 attaaattc 3077755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 164
Target Start/End: Original strand, 12096214 - 12096321
Alignment:
Q  56 ttttttatcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtccttatttagg 155  Q
    ||||||||||| |||||||| | ||||||||||||| |||||| | ||||||||  ||| ||  |||||||| || ||||||||||||||||| ||||      
T  12096214 ttttttatcttgtgatgttt-agctcttgacacaagacttaaggagtaattaaatcatataagtatttgtatcttatggactaaaatgtccttctttata 12096312  T
Q  156 attaaattc 164  Q
    |||||||||    
T  12096313 attaaattc 12096321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 73 - 149
Target Start/End: Original strand, 594124 - 594200
Alignment:
Q  73 ttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtcctta 149  Q
    ||||||||||| |||||||||||||| | ||||||||  ||| ||| |||| ||||||||||||||| || ||||||    
T  594124 ttttaactcttaacacaagtcttaaggagtaattaaaacataaaaatatttatatgttttggactaagatatcctta 594200  T

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Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 162
Target Start/End: Complemental strand, 32144392 - 32144285
Alignment:
Q  56 ttttttatcttttgatgttttaactctt-gacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtccttatttag 154  Q
    |||||||||||||||||||| | ||||| || | |||||||||| | ||||||| ||||| ||| |||| ||||||| | ||||||| |||||| ||||     
T  32144392 ttttttatcttttgatgtttaagctcttagatataagtcttaaggagtaattaacgtatataaatatttttatgtttcgaactaaaaagtccttgtttat 32144293  T
Q  155 gattaaat 162  Q
     |||||||    
T  32144292 aattaaat 32144285  T

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Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 8383971 - 8384016
Alignment:
Q  1 tattagaataaaaaatattcactgtgtaaattattaatatattgta 46  Q
    |||||||||| |||||||||| ||| ||||||||||||||||||||    
T  8383971 tattagaatataaaatattcattgtataaattattaatatattgta 8384016  T

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Target: scaffold0103 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 44877 - 44778
Alignment:
Q  63 tcttttgatgttttaactcttgacacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgtccttatttaggattaaat 162  Q
    ||||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||| |||||  ||||||  ||| |||||||||||||||  |||||||    
T  44877 tcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaatatttg--tgttttttacttaaatgtccttatttatcattaaat 44780  T

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Target: scaffold0276 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 2137 - 2092
Alignment:
Q  1 tattagaataaaaaatattcactgtgtaaattattaatatattgta 46  Q
    |||||||||| |||||||||| ||| ||||||||||||||||||||    
T  2137 tattagaatataaaatattcattgtataaattattaatatattgta 2092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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