View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14436_high_3 (Length: 349)
Name: NF14436_high_3
Description: NF14436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14436_high_3 |
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| [»] scaffold0041 (3 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 230 - 348
Target Start/End: Complemental strand, 1901 - 1783
Alignment:
| Q |
230 |
gcaacaatattgagtttttaccttgaaatttatctctactgtcaatttacaattgttggttcattctttgtttctttttgtacctttgtacatttaggta |
329 |
Q |
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| T |
1901 |
gcaacaatattgagtttttaccttgaaatttatctcaactgtcaatttacaattgttggttcattctttgtttctttttgtacctttgtacatttaggta |
1802 |
T |
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| Q |
330 |
gctgatacatcattctaat |
348 |
Q |
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| T |
1801 |
gctgatacatcattctaat |
1783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 2082 - 2015
Alignment:
| Q |
11 |
caaaggtaatcggaacagacttaattcccctctttttacctcaattttcgtccaaaccacaaaagccc |
78 |
Q |
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| T |
2082 |
caaaggtaatcggaacagacttaattcccctctttttacctcaattttcgtccaaaccacaaaagccc |
2015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 208
Target Start/End: Complemental strand, 1918 - 1885
Alignment:
| Q |
175 |
aatgttctagtcacattgcaacaatattgagttt |
208 |
Q |
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| T |
1918 |
aatgttctagtcacattgcaacaatattgagttt |
1885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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