View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14436_high_4 (Length: 343)
Name: NF14436_high_4
Description: NF14436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14436_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 13975362 - 13975685
Alignment:
| Q |
1 |
taattagcagtaccatccgggtattatctcttgttggtttaaatcattatgagtctatactttggagtttgaaaatagaacacacacaaaatggggtggg |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||| |
|
|
| T |
13975362 |
taattagcagtacgatccgggtattatctcttgttggtttaaatcattatgagtctatactttggagtttgaaaatagaacccacataaaatgggatggg |
13975461 |
T |
|
| Q |
101 |
acatttaacgattccctccaatnnnnnnntgaatatgtcaaagagagtgttcaagaatgagtgttgcaagtatttgtcaagtttatatgatcaaaagttc |
200 |
Q |
| |
|
|||| ||||||||||||||||| ||||| || ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
13975462 |
acatgtaacgattccctccaataaaaaagtgaat--gttaaagagagtgttcaaaaatgagtgttgcatgtatttgtcaagtttatatgatcaaaaattc |
13975559 |
T |
|
| Q |
201 |
tctatgatggtccatgcaaggtagcatcattatcttattatttaaagatgacgtccaannnnnnnnnagagtgcacaaaagaatagaatagttgttgtta |
300 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13975560 |
tctatgatggtccatgcaaggttgcatcattatcttattatttaaagatgacgtccaa-ttttttttagagtgcacaaaagaatagaatagttgttgtta |
13975658 |
T |
|
| Q |
301 |
gggttaaaattccaaagctccattcag |
327 |
Q |
| |
|
|||||||||||| |||||||||||||| |
|
|
| T |
13975659 |
gggttaaaattcaaaagctccattcag |
13975685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 10950223 - 10950186
Alignment:
| Q |
27 |
tctcttgttggtttaaatcattatgagtctatactttg |
64 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||| |
|
|
| T |
10950223 |
tctcttattagtttaaatcattatgagtctatactttg |
10950186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 57
Target Start/End: Complemental strand, 41727567 - 41727537
Alignment:
| Q |
27 |
tctcttgttggtttaaatcattatgagtcta |
57 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
41727567 |
tctcttgttggtttaaatcattatgagtcta |
41727537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 55452065 - 55452097
Alignment:
| Q |
34 |
ttggtttaaatcattatgagtctatactttgga |
66 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
55452065 |
ttggtttaaatcattatgagtctacactttgga |
55452097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University