View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14436_high_6 (Length: 325)
Name: NF14436_high_6
Description: NF14436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14436_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 318
Target Start/End: Original strand, 44607537 - 44607855
Alignment:
| Q |
10 |
aagaatatttggtaatgtgatgtgatgagaatttgcaaaagtagnnnnnnnnncttacaatgtt--gtgttttgttgttgtgattgggggagcgttgtta |
107 |
Q |
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| T |
44607537 |
aagaatatttggtaatgtgatgtgatgagaatttgcaaaagtagtttttttg-cttagaatgttttgtgttttgttgttgtgattgggggagcgttctta |
44607635 |
T |
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| Q |
108 |
gcggtgaaaccatgcaatagtggctcgtagtgaaaatcgctgtattttagtttctatcaat---------tatgtgattttccttttgtttatgattaag |
198 |
Q |
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| T |
44607636 |
gcggtgaaaccatgcaatagtggctcgtagtgaaattcgctgtattttagtttctatcaatatcaatcaatatgtgattttccttttgtttatgattaag |
44607735 |
T |
|
| Q |
199 |
ataagatttcttaatataaaaacgatttacataagattgaccaatccagttaatttagctttactataaaacaatgtatttagtggattnnnnnnngttg |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44607736 |
ataagatttcttaatataaaaacgatttacataagattcaccaatccagttaatttagctttactataaaacaatgtatttagtggattaaaaaaagttg |
44607835 |
T |
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| Q |
299 |
atagaaagcgtatttattaa |
318 |
Q |
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|||||||||||||||||||| |
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| T |
44607836 |
atagaaagcgtatttattaa |
44607855 |
T |
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