View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14436_high_8 (Length: 309)
Name: NF14436_high_8
Description: NF14436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14436_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 4748859 - 4749161
Alignment:
| Q |
1 |
gcttcagctatggcacttgcagggaaaaaatcattccatggaatatcaagtgccgagcataaacgtttgcgaaaggtaaccacgtctccaataaatggtc |
100 |
Q |
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| T |
4748859 |
gcttcagctatggcacttgcagggaaaaaatcattccatggaatatcaagtgccgagcataaacgtttgcgaaaggtaaccacgtctccaataaatggtc |
4748958 |
T |
|
| Q |
101 |
acgaattgtacaattatattggtctcatagaagatattgtagtgaaaaatttagaagattcgtctaaaacgaacacaccggttgagtttctcaaagaggc |
200 |
Q |
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| T |
4748959 |
acgaattgtacaattatattggtctcatagaagatattgtagtgaaaaatttagaagattcgtctaaaacgaacacaccggttgagtttctcaaagaggc |
4749058 |
T |
|
| Q |
201 |
caaaaagttcacttttgatgtcatcacttctgttttcttttcctctgatcgtgaacatgctgaccttgctttggttgagcatttgtacattgattttctt |
300 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4749059 |
caaaaagttcacttttgatgtcatcacttctgtcttcttttcctctgatcgtgaacatgctgaccttgctttggttgagcatttgtacattgatttgctt |
4749158 |
T |
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| Q |
301 |
cga |
303 |
Q |
| |
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||| |
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| T |
4749159 |
cga |
4749161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 296
Target Start/End: Original strand, 4756713 - 4756992
Alignment:
| Q |
20 |
cagggaaaaaatcattccatggaatatcaagtgccgagcataaacgtttgcgaaaggtaaccacgtctccaataaatggtcacgaa---ttgtacaatta |
116 |
Q |
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|||| |||| ||||||||||||||| |||| | | || || ||||||||| || ||| ||| ||||| ||||||||| ||||| |||| | ||| |
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| T |
4756713 |
caggtaaaagatcattccatggaatctcaaattctgaacacaaacgtttgagacgtttaatcacttctcccataaatggtgacgaagcattgtcaactta |
4756812 |
T |
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| Q |
117 |
tattggtctcatagaagatattgtagtgaaaaatttagaagattcgtctaaaacgaacacaccggttgagtttctcaaagaggccaaaaagttcactttt |
216 |
Q |
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|||| ||||||| || |||| || |||||| |||||||||| | |||||||| ||||||||| ||||||||| |||||| | |||||| ||||| |
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| T |
4756813 |
tattagtctcattgaggatagtgctgtgaaacatttagaagagttgtctaaaatgaacacaccatgtgagtttcttaaagagatgagaaagtttgctttt |
4756912 |
T |
|
| Q |
217 |
gatgtcatcacttctgttttcttttcctctgatcgtgaacatgctgaccttgctttggttgagcatttgtacattgattt |
296 |
Q |
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| T |
4756913 |
gaagtcatcactaccatcttcatttcttctgatcgtgatcacgtggaccttggtttggttgaaaatttgtacattgattt |
4756992 |
T |
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