View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14437_high_1 (Length: 482)
Name: NF14437_high_1
Description: NF14437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14437_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 467
Target Start/End: Complemental strand, 41788295 - 41787846
Alignment:
| Q |
18 |
ccagcaaagggttatgtgaagtgtaatgtggacgctaccattttctatgatcaatggcgttttggtattggaatgtgtattcgagacactcgggaacatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41788295 |
ccagcaaagggttatgtgaagtgtaatgtggacgctgccattttctatgatcaatggcgttttggtattggaatgtgtatttgagacactcgggaacatt |
41788196 |
T |
|
| Q |
118 |
ttatcaaagcgctaaccaaatggtttgaaggaagtccacctccaatggaagcagaagcaattggcttgaaggaagctataatttggcttggtgggttggg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
41788195 |
ttatcaaagcgctaaccaaatggtttgaaggaagtcaacctccaatggaagcataagcaattgggttgaaggaagctataatttggcttggtgagttggg |
41788096 |
T |
|
| Q |
218 |
gttatcaaaagtgtaaattgagctggattgcaagctagtggtagacggcattggtgatagatcggtgagtcagtctgaattcggcaatttattaagccta |
317 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41788095 |
gttatcaaaagtgtcaattgagctggattgcaagctagtggtagacgacattggtgatagatcggtgagtcagtctgaattcggcaatttattaagccta |
41787996 |
T |
|
| Q |
318 |
tgtaggtcacttttaattcaatagttaaactttgagataaattttgttaggagacaagttagttatgttgctcattgattagcaagggcgtcacaatata |
417 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
41787995 |
tgtaggtcacttttaattcaatatccaaactttgagataaattttgttaggagacaagctaattatgttgctcattgattagcaagggcgtcacaatata |
41787896 |
T |
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| Q |
418 |
acgctagtcaccaagttttcgagtcgattccatcttgtatttcccatatt |
467 |
Q |
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| T |
41787895 |
acgctaatcatcaagttttcgagttgattccatcttgtatttcccatatt |
41787846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 22 - 386
Target Start/End: Original strand, 28481263 - 28481630
Alignment:
| Q |
22 |
caaagggttatgtgaagtgtaatgtggacgctaccattttctatgatcaatggcgttttggtattggaatgtgtattcgagacactcgggaacattttat |
121 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| |||||| | ||| ||||||||| |
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| T |
28481263 |
caaagggttatgtgaagtgtaatgtggacgctgccattttctataatcaatggcgctttggtattggaatgtgtatttgagacatttggggacattttat |
28481362 |
T |
|
| Q |
122 |
caaagcgctaaccaaatggtttgaaggaagtccacctccaatggaagcagaagcaattggcttgaaggaagctataatttggcttggtgggttggggtta |
221 |
Q |
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| T |
28481363 |
taaagcgctgacgaaatggtttgaaggaagtccacctccaatggaagcagaagcaattgggttgaaggaaactataatttgacttggtgagttggggtta |
28481462 |
T |
|
| Q |
222 |
tcaaaagtgtaaattgagctggattgcaagctagtggtagacggcattggtgatagatcggtgagtcagtctgaattcggcaatttattaagcctatgta |
321 |
Q |
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|||||||||| |||||| || ||||||||||||||||||||| |||||||||||| ||||||| |||||| |||| ||||||||||||| |||||| |
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| T |
28481463 |
tcaaaagtgtcaattgaactacattgcaagctagtggtagacgacattggtgatagctcggtgaatcagtccaaatttaacaatttattaagcatatgta |
28481562 |
T |
|
| Q |
322 |
ggtcacttttaattcaatagttaaactttgagataaattttgtt---aggagacaagttagttatgtt |
386 |
Q |
| |
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||||||| |||| |||| | ||||||||||||||||||| || || |||||||||| ||||||| |
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| T |
28481563 |
ggtcactcttaaatcaacatccaaactttgagataaattttattaaaagaagacaagttaattatgtt |
28481630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 171 - 277
Target Start/End: Complemental strand, 19794504 - 19794398
Alignment:
| Q |
171 |
gaagcaattggcttgaaggaagctataatttggcttggtgggttggggttatcaaaagtgtaaattgagctggattgcaagctagtggtagacggcattg |
270 |
Q |
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||||||||||| |||| |||||||| ||||||||||||| |||| |||||| ||||| ||||||||| |||||||| |||||||| |||||||||| |
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| T |
19794504 |
gaagcaattggtttgagagaagctattatttggcttggtgaactgggactatcaagagtgtcaattgagctagattgcaaactagtggtggacggcattg |
19794405 |
T |
|
| Q |
271 |
gtgatag |
277 |
Q |
| |
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||||||| |
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| T |
19794404 |
gtgatag |
19794398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 344 - 458
Target Start/End: Original strand, 29542205 - 29542319
Alignment:
| Q |
344 |
aaactttgagataaattttgttaggagacaagttagttatgttgctcattgattagcaagggcgtcacaatataacgctagtcaccaagttttcgagtcg |
443 |
Q |
| |
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||||||| |||||||||||||||||| ||||| | |||||| || ||| | ||||| |||| |||| ||| ||||| ||||||| ||||| || ||| |
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| T |
29542205 |
aaactttaagataaattttgttaggatacaagcaaattatgtcgcccatggcttagctagggagtcaaaattgtacgctcgtcaccatgtttttgattcg |
29542304 |
T |
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| Q |
444 |
attccatcttgtatt |
458 |
Q |
| |
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||||||||||||||| |
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| T |
29542305 |
attccatcttgtatt |
29542319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 274
Target Start/End: Complemental strand, 47814085 - 47814003
Alignment:
| Q |
192 |
gctataatttggcttggtgggttggggttatcaaaagtgtaaattgagctggattgcaagctagtggtagacggcattggtga |
274 |
Q |
| |
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||||| |||||||||||| ||||| | ||||||||| | |||||||| |||||||||||||||||||| |||||||||| |
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| T |
47814085 |
gctattatttggcttggtcatttgggtatgtcaaaagtgcatattgagctagattgcaagctagtggtagaaagcattggtga |
47814003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 46052014 - 46051969
Alignment:
| Q |
165 |
gaagcagaagcaattggcttgaaggaagctataatttggcttggtg |
210 |
Q |
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||||||||||||||||| ||||||||||| || ||||||||||||| |
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| T |
46052014 |
gaagcagaagcaattggtttgaaggaagccatcatttggcttggtg |
46051969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 25500831 - 25500888
Alignment:
| Q |
223 |
caaaagtgtaaattgagctggattgcaagctagtggtagacggcattggtgatagatc |
280 |
Q |
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|||||||| | |||||||| ||||||||||||||||| ||| |||||| |||| |||| |
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| T |
25500831 |
caaaagtgcatattgagctagattgcaagctagtggttgacagcattgttgatggatc |
25500888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 274
Target Start/End: Complemental strand, 38195833 - 38195751
Alignment:
| Q |
192 |
gctataatttggcttggtgggttggggttatcaaaagtgtaaattgagctggattgcaagctagtggtagacggcattggtga |
274 |
Q |
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||||| |||||||||||| ||||| | ||||||||| | | |||||| |||||||||||||||||||| |||||||||| |
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| T |
38195833 |
gctattatttggcttggtcatttgggtatgtcaaaagtgcatactgagctagattgcaagctagtggtagaaagcattggtga |
38195751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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