View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14437_low_11 (Length: 318)
Name: NF14437_low_11
Description: NF14437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14437_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 6e-74; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 25046964 - 25046798
Alignment:
| Q |
70 |
aaaatatgaaaaacatttttattatttataacaaagtgactataggtgaattttgagaaaaaatactcctatttattgaatgttactagtaaagaaaaca |
169 |
Q |
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| T |
25046964 |
aaaatatgaaaaacattttt-ttatttataacaaagtgactataggtgaattttgagaaaaaatactcctatttattgaatgttactggtaaagaaaaca |
25046866 |
T |
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| Q |
170 |
aatacggacatgagaaccgccttcttgattgag--ttgtcaatttcttccaaaatacgtagatgattt |
235 |
Q |
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| T |
25046865 |
aatacggacatgagaaccgccttcttgattgagttttgtcaatttcttccaaaatacgcagatgattt |
25046798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 209 - 301
Target Start/End: Complemental strand, 25046801 - 25046709
Alignment:
| Q |
209 |
atttcttccaaaatacgtagatgatttagaaatttctctattgaaccatccttccattaaaccacttctcacacaacatagtgaatagagatg |
301 |
Q |
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| T |
25046801 |
atttcttccgaaacacgtagatgatttagaaatttctctattgaaacatccttccattaaaccacttctcacacaacatagtgaatagagatg |
25046709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 25047060 - 25046988
Alignment:
| Q |
1 |
aagcttgttgtactgtatcaaactccatacccaattttggtatttgttatgatgtaattggccaagtataaaa |
73 |
Q |
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| T |
25047060 |
aagcttgttgtattgtattaaactccatacccaattttggtatttgttatgctgtaattggccaagtataaaa |
25046988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 283
Target Start/End: Original strand, 29176033 - 29176076
Alignment:
| Q |
240 |
atttctctattgaaccatccttccattaaaccacttctcacaca |
283 |
Q |
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| T |
29176033 |
atttctctattgaaacttcattccattaaaccacttctcacaca |
29176076 |
T |
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