View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14437_low_12 (Length: 302)
Name: NF14437_low_12
Description: NF14437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14437_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 21930075 - 21930353
Alignment:
| Q |
1 |
taacttctgtctatccctagccttatgattctgaaaccaatagaaaacattttttccttctatcctaccatagaaagaaaggtgagtagttatttgctga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21930075 |
taacttctgtctatccctagccttatgattctgaaaccaatagaaaacattttttccttctatcctaccatagaaagaaaggtgagtagttatttgctga |
21930174 |
T |
|
| Q |
101 |
atttgaacagcactaggagttctaattccacttctatacagttcctctaagatcataagttgttcagttgtagggctccatcttgatgaaccaggtggag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21930175 |
atttgaacagcactaggagttctaattccacttctatacagttcctctaagatcataagttgttcagttgtagggctccatcttgatgaaccaggtggag |
21930274 |
T |
|
| Q |
201 |
acattattgattttggaagttaggtttttgtgatgagagggatgaaagtgatgtataaatagagggacagagagaaaga |
279 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21930275 |
acattattgattttggaaattaggtttttgtgatgagagggatgaaagtgatgtataaatagagggacagagagaaaga |
21930353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 40004924 - 40004958
Alignment:
| Q |
26 |
tgattctgaaaccaatagaaaacattttttccttc |
60 |
Q |
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||||||||||||||||||||||||||||| ||||| |
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| T |
40004924 |
tgattctgaaaccaatagaaaacatttttgccttc |
40004958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 45304843 - 45304877
Alignment:
| Q |
26 |
tgattctgaaaccaatagaaaacattttttccttc |
60 |
Q |
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| T |
45304843 |
tgattctgaaaccaatagaaaacatttttgccttc |
45304877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 40220622 - 40220588
Alignment:
| Q |
26 |
tgattctgaaaccaatagaaaacattttttccttc |
60 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
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|
| T |
40220622 |
tgattctgaaaccaatagaaaacatttttgccttc |
40220588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 8554830 - 8554898
Alignment:
| Q |
4 |
cttctgtctatccctagccttatgattctgaaaccaatagaaaacattttttccttctatcctaccata |
72 |
Q |
| |
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||||||||| || ||||| || ||||| ||||||||||| || |||||||| ||||| ||| ||||||| |
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| T |
8554830 |
cttctgtctttctctagctttgtgattttgaaaccaataaaagacatttttgccttcaatcttaccata |
8554898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 32906812 - 32906772
Alignment:
| Q |
20 |
gccttatgattctgaaaccaatagaaaacattttttccttc |
60 |
Q |
| |
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||||| |||||||| ||||||||||| |||||||||||||| |
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|
| T |
32906812 |
gccttgtgattctggaaccaatagaacacattttttccttc |
32906772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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