View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14437_low_15 (Length: 246)
Name: NF14437_low_15
Description: NF14437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14437_low_15 |
 | |
|
| [»] scaffold0004 (2 HSPs) |
| | |
|
| [»] scaffold0303 (1 HSPs) |
| | |
|
| [»] scaffold0097 (1 HSPs) |
| | |
|
| [»] scaffold0031 (1 HSPs) |
| | |
|
| [»] scaffold0047 (1 HSPs) |
| | |
|
| [»] scaffold0882 (1 HSPs) |
| | |
|
| [»] scaffold0766 (1 HSPs) |
| | |
|
| [»] scaffold1744 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 46467893 - 46467662
Alignment:
| Q |
1 |
aagagcacatacttcaaatttaatggtaacataagggggaactatccttgagattttcactaaccg--cttttaaacaggataagctagtaacctttaca |
98 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||| | |||||||| ||||||||||||||| |||||||||||||||| ||||||||||||| | |
|
|
| T |
46467893 |
aagagcacatacttaaaatttaatggtaacacaagggg-agctatccttaagattttcactaaccaaacttttaaacaggataaactagtaacctttata |
46467795 |
T |
|
| Q |
99 |
aataacgagcactctccaaacaaaacaatcttttgtaggatagtctctaaaactaagagatatcacctctctttaaaccttgggatcgcacccaatacaa |
198 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
46467794 |
aataatgagcactctccaaacaaaacaatgctttgtaggatagtctctaaaactaagagatatcacctctcttaaaaccttgagatcgcacccaatacaa |
46467695 |
T |
|
| Q |
199 |
aagaaattacaacaataaaataatacaccaaat |
231 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
|
|
| T |
46467694 |
aagaaattacaacaataaaataatacatcaaat |
46467662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 66 - 231
Target Start/End: Complemental strand, 15890576 - 15890410
Alignment:
| Q |
66 |
gcttttaaacaggataagctagtaacctttacaaataacgagcactctccaaacaaaacaatcttttgtaggatagtctctaaaactaagagatatcacc |
165 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| | |||||||||||| ||||||||||||| |
|
|
| T |
15890576 |
gcttttaattaggataagctagtaacctttacaaataacgagcactctccaaacaaaacagtcctttgtaaaagagtctctaaaaccaagagatatcacc |
15890477 |
T |
|
| Q |
166 |
tctctttaaaccttgggatcgcacccaatacaaa-agaaattacaacaataaaataatacaccaaat |
231 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
15890476 |
tctcttgaaaccttgggatcgcacccaatacaaataagaattacaacaataaaataatacaccaaat |
15890410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 46 - 231
Target Start/End: Complemental strand, 8827282 - 8827096
Alignment:
| Q |
46 |
ccttgagattttcactaacc--gcttttaaacaggataagctagtaacctttacaaataacgagcactctccaaacaaaacaatcttttgtaggatagtc |
143 |
Q |
| |
|
||||||||||||||||| || ||||||||| |||| |||||||||| ||||||||| ||||||| ||||||||||||| ||||||||||| | || | |
|
|
| T |
8827282 |
ccttgagattttcactagccaagcttttaaataggagaagctagtaaactttacaaaatacgagcattctccaaacaaaaatatcttttgtagaagagcc |
8827183 |
T |
|
| Q |
144 |
tctaaaactaagagatatcacctctctttaaaccttgggatcgcacccaatacaaaagaaattacaacaataaaataatacaccaaat |
231 |
Q |
| |
|
| |||| | ||||||||||||||||||| ||| ||||| ||||||| |||| | ||||||| |||| |||||||||||||||||||| |
|
|
| T |
8827182 |
tataaacccaagagatatcacctctcttgaaatcttggaatcgcacacaatgc-aaagaaaaaacaataataaaataatacaccaaat |
8827096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 46 - 231
Target Start/End: Original strand, 353764 - 353953
Alignment:
| Q |
46 |
ccttgagattttcactaacc--gcttttaaacaggataagctagtaacctttacaa-ataacgagcactctccaaacaaaacaatcttttgtaggatagt |
142 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||| | || |
|
|
| T |
353764 |
ccttgagattttcactaacctagcttttaaacaggataagctagtaacctttacaagatagcgagcactctccaaacaaaacaatcctttgtagaagagc |
353863 |
T |
|
| Q |
143 |
ctctaaaactaagagatatcacctctctttaaaccttgggatcgcacccaatacaaaaga-aattacaacaataaaataatacaccaaat |
231 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||| |||||| ||||||||||||| |
|
|
| T |
353864 |
ctctaaacccaagagatatcacctctcttgaaaccttgggatcgcacccaatacaaaatagaattacaataataaagtaatacaccaaat |
353953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 46 - 231
Target Start/End: Original strand, 113044 - 113233
Alignment:
| Q |
46 |
ccttgagattttcactaacc--gcttttaaacaggataagctagtaacctttacaaataa-cgagcactctccaaacaaaacaatcttttgtaggatagt |
142 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||| |||||||||| |||||||||||||| ||||||| | ||| |
|
|
| T |
113044 |
ccttgagattttcactaacctagcttttaaacgggataagctagtaacctttataaataagcgagcactcttcaaacaaaacaatcctttgtagaagagt |
113143 |
T |
|
| Q |
143 |
ctctaaaactaagagatatcacctctctttaaaccttgggatcgcacccaatacaaaaga-aattacaacaataaaataatacaccaaat |
231 |
Q |
| |
|
|||| || | ||||||||||||||||||| |||| |||||||| |||||||||||||| | | |||||| |||||| ||||||||||||| |
|
|
| T |
113144 |
ctcttaacccaagagatatcacctctcttgaaactttgggatcacacccaatacaaaatagagttacaataataaagtaatacaccaaat |
113233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 46 - 231
Target Start/End: Original strand, 14404623 - 14404810
Alignment:
| Q |
46 |
ccttgagattttcactaacc--gcttttaaacaggataagctagtaacctttacaa-ataacgagcactctccaaacaaaacaatcttttgtaggatagt |
142 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||| | || |
|
|
| T |
14404623 |
ccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaagatagcgagcactctccaaacaaaacaatcctttgtagaagagc |
14404722 |
T |
|
| Q |
143 |
ctctaaaactaagagatatcacctctctttaaaccttgggatcgcacccaatacaaaagaaattacaacaataaaataatacaccaaat |
231 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||| | |||||| |||||| ||||||||||||| |
|
|
| T |
14404723 |
ctctaaacccaagagatatcacctctcttgaaaccttgggatcgcacccaatacaaaa-tagttacaataataaagtaatacaccaaat |
14404810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 46 - 200
Target Start/End: Original strand, 40665983 - 40666140
Alignment:
| Q |
46 |
ccttgagattttcactaaccg--cttttaaacaggataagctagtaacctttacaaataa-cgagcactctccaaacaaaacaatcttttgtaggatagt |
142 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||| ||| |||||| |||||||||||||| ||||||| | || |
|
|
| T |
40665983 |
ccttgagattttcactaacctaacttttaaacgggataagctaataacctttacaaataagcgaacactcttcaaacaaaacaatcatttgtagaagagc |
40666082 |
T |
|
| Q |
143 |
ctctaaaactaagagatatcacctctctttaaaccttgggatcgcacccaatacaaaa |
200 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
40666083 |
ctctaaactcaagagatatcacctctcttgaaaccttgggatcacacccaatacaaaa |
40666140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 199
Target Start/End: Complemental strand, 25685948 - 25685816
Alignment:
| Q |
68 |
ttttaaacaggataagctagtaacctttacaa-ataacgagcactctccaaacaaaacaatcttttgtaggatagtctctaaaactaagagatatcacct |
166 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||| ||||||| |||||||| ||| ||| ||| ||| | || ||||||| | |||||||||||||| |
|
|
| T |
25685948 |
ttttaaacaggataatctagtaacctttacaagatagcgagcacactccaaacgaaattatcctttatagaaaagcctctaaatccaagagatatcacct |
25685849 |
T |
|
| Q |
167 |
ctctttaaaccttgggatcgcacccaatacaaa |
199 |
Q |
| |
|
||||| ||| ||||||||| |||| ||| |||| |
|
|
| T |
25685848 |
ctcttgaaatcttgggatcacaccaaatgcaaa |
25685816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 46 - 231
Target Start/End: Complemental strand, 39925712 - 39925525
Alignment:
| Q |
46 |
ccttgagattttcactaacc--gcttttaaacaggataagctagtaacctttacaa-ataacgagcactctccaaacaaaacaatcttttgtaggatagt |
142 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||| | || |
|
|
| T |
39925712 |
ccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaagatagcgagcactctccaaacaaaacaatcctttgtagaagagc |
39925613 |
T |
|
| Q |
143 |
ctctaaaactaagagatatcacctctctttaaaccttgggatcgcacccaatacaaaagaaattacaacaataaaataatacaccaaat |
231 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||| | |||||| |||||| ||||||||||||| |
|
|
| T |
39925612 |
ctctaaacccaagagatatcacctctcttgaaaccttgggatcgcacccaatacaaaa-tagttacaataataaagtaatacaccaaat |
39925525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 46 - 231
Target Start/End: Complemental strand, 3274344 - 3274155
Alignment:
| Q |
46 |
ccttgagattttcactaacc--gcttttaaacaggataagctagtaacctttacaa-ataacgagcactctccaaacaaaacaatcttttgtaggatagt |
142 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||| | || |
|
|
| T |
3274344 |
ccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaagatagcgagcactctccaaacaaaacaatcctttgtagaagagc |
3274245 |
T |
|
| Q |
143 |
ctctaaaactaagagatatcacctctctttaaaccttgggatcgcacccaatacaaa-agaaattacaacaataaaataatacaccaaat |
231 |
Q |
| |
|
||||||| | ||||||||||||||||||| ||||||||||||| ||||||||||||| | |||||||| |||||| ||||||||||||| |
|
|
| T |
3274244 |
ctctaaacccaagagatatcacctctcttgaaaccttgggatcacacccaatacaaataagaattacaataataaagtaatacaccaaat |
3274155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 46 - 231
Target Start/End: Complemental strand, 3277754 - 3277565
Alignment:
| Q |
46 |
ccttgagattttcactaacc--gcttttaaacaggataagctagtaacctttacaa-ataacgagcactctccaaacaaaacaatcttttgtaggatagt |
142 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||| | || |
|
|
| T |
3277754 |
ccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaagatagcgagcactctccaaacaaaacaatcctttgtagaagagc |
3277655 |
T |
|
| Q |
143 |
ctctaaaactaagagatatcacctctctttaaaccttgggatcgcacccaatacaaa-agaaattacaacaataaaataatacaccaaat |
231 |
Q |
| |
|
||||||| | ||||||||||||||||||| ||||||||||||| ||||||||||||| | |||||||| |||||| ||||||||||||| |
|
|
| T |
3277654 |
ctctaaacccaagagatatcacctctcttgaaaccttgggatcacacccaatacaaataagaattacaataataaagtaatacaccaaat |
3277565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 46 - 231
Target Start/End: Original strand, 5026999 - 5027186
Alignment:
| Q |
46 |
ccttgagattttcactaacc--gcttttaaacaggataagctagtaacctttacaa-ataacgagcactctccaaacaaaacaatcttttgtaggatagt |
142 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||| |||||||| ||| | ||||||||||||||||||||||| ||||||| | || |
|
|
| T |
5026999 |
ccttgagattttcactaacctagcttttaaacgggataagctagtaatctttacaagatagcaagcactctccaaacaaaacaatcctttgtagaagagc |
5027098 |
T |
|
| Q |
143 |
ctctaaaactaagagatatcacctctctttaaaccttgggatcgcacccaatacaaaagaaattacaacaataaaataatacaccaaat |
231 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||| | ||| || |||||||||||||||||||| |
|
|
| T |
5027099 |
ctctaaacctaagagatatcacctctcttgaaaccttgggatcgcacccaatataaaa-tagttataataataaaataatacaccaaat |
5027186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 9e-54; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 46 - 231
Target Start/End: Complemental strand, 39038638 - 39038449
Alignment:
| Q |
46 |
ccttgagattttcactaacc--gcttttaaacaggataagctagtaacctttacaa-ataacgagcactctccaaacaaaacaatcttttgtaggatagt |
142 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||| | || |
|
|
| T |
39038638 |
ccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaagatagcgagcactctccaaacaaaacaatcctttgtagaagagc |
39038539 |
T |
|
| Q |
143 |
ctctaaaactaagagatatcacctctctttaaaccttgggatcgcacccaatacaaa-agaaattacaacaataaaataatacaccaaat |
231 |
Q |
| |
|
||||||| | ||||||||||||||||||| ||||||||||||| ||||||||||||| | |||||||| |||||| ||||||||||||| |
|
|
| T |
39038538 |
ctctaaacccaagagatatcacctctcttgaaaccttgggatcacacccaatacaaataagaattacaataataaagtaatacaccaaat |
39038449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 186513 - 186565
Alignment:
| Q |
153 |
aagagatatcacctctctttaaaccttgggatcgcacccaatacaaaagaaat |
205 |
Q |
| |
|
|||| |||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
186513 |
aagaaatatcacctctcttgaaactttgggatcgcacccaatacaaaagaaat |
186565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 186377 - 186458
Alignment:
| Q |
46 |
ccttgagattttcactaac--cgcttttaaacaggataagctagt-aacctttac-aaataacgagcactctccaaacaaaa |
123 |
Q |
| |
|
||||||||||||||||||| ||||||| || |||||| ||||| ||||||||| ||||| | |||||||||||||||||| |
|
|
| T |
186377 |
ccttgagattttcactaacttagcttttatacgggataaactagtaaacctttacaaaatagcaagcactctccaaacaaaa |
186458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 9e-54; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 46 - 231
Target Start/End: Complemental strand, 16851505 - 16851316
Alignment:
| Q |
46 |
ccttgagattttcactaacc--gcttttaaacaggataagctagtaacctttacaa-ataacgagcactctccaaacaaaacaatcttttgtaggatagt |
142 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||| | || |
|
|
| T |
16851505 |
ccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaagatagcgagcactctccaaacaaaacaatcctttgtagaagagc |
16851406 |
T |
|
| Q |
143 |
ctctaaaactaagagatatcacctctctttaaaccttgggatcgcacccaatacaaa-agaaattacaacaataaaataatacaccaaat |
231 |
Q |
| |
|
||||||| | ||||||||||||||||||| ||||||||||||| ||||||||||||| | |||||||| |||||| ||||||||||||| |
|
|
| T |
16851405 |
ctctaaacccaagagatatcacctctcttgaaaccttgggatcacacccaatacaaataagaattacaataataaagtaatacaccaaat |
16851316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 82 - 231
Target Start/End: Complemental strand, 17365008 - 17364859
Alignment:
| Q |
82 |
agctagtaacctttacaaataacgagcactctccaaacaaaacaatcttttgtaggatagtctctaaaactaagagatatcacctctctttaaaccttgg |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
17365008 |
agctagtaacctttacaaataacgagcactctccaaacaaaacaatcatttgtagaagagtctctaaacctaagagatatcacctttctttaaaccttgg |
17364909 |
T |
|
| Q |
182 |
gatcgcacccaatacaaaagaaattacaacaataaaataatacaccaaat |
231 |
Q |
| |
|
|| | | || |||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
17364908 |
gaccaccccaaatacaaaagaaattacaacaataaaatgatacagcaaat |
17364859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 46 - 231
Target Start/End: Complemental strand, 21198540 - 21198350
Alignment:
| Q |
46 |
ccttgagattttcactaacc--gcttttaaacaggataagctagtaacctttacaaataa-cgagcactctccaaacaaaacaatcttttgtaggatagt |
142 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||| | ||| |
|
|
| T |
21198540 |
ccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaaatatgcgagcactcttcaaacaaaacaatcctttgtagaagagt |
21198441 |
T |
|
| Q |
143 |
ctctaaaactaagagatatcacctctctttaaaccttgggatcgcacccaatacaaaaga--aattacaacaataaaataatacaccaaat |
231 |
Q |
| |
|
||||||| ||||||||||||||||||| |||| |||||||||||||| |||||||| | | |||||| |||||| ||||||||||||| |
|
|
| T |
21198440 |
ctctaaactcaagagatatcacctctcttgaaactttgggatcgcaccctatacaaaataagagttacaataataaagtaatacaccaaat |
21198350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 46 - 231
Target Start/End: Original strand, 52986892 - 52987082
Alignment:
| Q |
46 |
ccttgagattttcactaacc--gcttttaaacaggataagctagtaacctttacaaa-taacgagcactctccaaacaaaacaatcttttgtaggatagt |
142 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||||||||||||||| || |||||||||||||||||||| | | ||||||| | || |
|
|
| T |
52986892 |
ccttgagattttcactaacttagcttttaaacgggataagctagtaacctttacaaaatagcgagcactctccaaacaaaattaccctttgtagaagagc |
52986991 |
T |
|
| Q |
143 |
ctctaaaactaagagatatcacctctctttaaaccttgggatcgcacccaatacaaaaga--aattacaacaataaaataatacaccaaat |
231 |
Q |
| |
|
||||||| | |||||| |||||||||||| |||| ||||||| || |||||||||||| | | || ||| |||||| ||||||||||||| |
|
|
| T |
52986992 |
ctctaaacccaagagagatcacctctcttgaaactttgggattgcgcccaatacaaaataagagttgcaataataaagtaatacaccaaat |
52987082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0303 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0303
Description:
Target: scaffold0303; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 46 - 231
Target Start/End: Complemental strand, 21306 - 21119
Alignment:
| Q |
46 |
ccttgagattttcactaacc--gcttttaaacaggataagctagtaacctttacaa-ataacgagcactctccaaacaaaacaatcttttgtaggatagt |
142 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||| | ||||||||||||||||||||||| ||||||| | || |
|
|
| T |
21306 |
ccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaagatagctagcactctccaaacaaaacaatcctttgtagaagagc |
21207 |
T |
|
| Q |
143 |
ctctaaaactaagagatatcacctctctttaaaccttgggatcgcacccaatacaaaagaaattacaacaataaaataatacaccaaat |
231 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||| | |||||| |||||| ||||||||||||| |
|
|
| T |
21206 |
ctctaaacccaagagatatcacctctcttgaaaccttgggatcgcacccaatacaaaa-tagttacaataataaagtaatacaccaaat |
21119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 46 - 231
Target Start/End: Original strand, 30832 - 31022
Alignment:
| Q |
46 |
ccttgagattttcactaacc--gcttttaaacaggataagctagtaacctttacaaataa-cgagcactctccaaacaaaacaatcttttgtaggatagt |
142 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||| | ||| |
|
|
| T |
30832 |
ccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaaataagcgagcactcttcaaacaaaacaatcctttgtaaaagagt |
30931 |
T |
|
| Q |
143 |
ctctaaaactaagagatatcacctctctttaaaccttgggatcgcacccaatacaaaaga--aattacaacaataaaataatacaccaaat |
231 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||| ||||||||||||||||||||||| | | |||||| |||||| ||||||||||||| |
|
|
| T |
30932 |
ctctaaacccaagagatatcacctctcttgaaactttgggatcgcacccaatacaaaataagagttacaataataaagtaatacaccaaat |
31022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 46 - 231
Target Start/End: Original strand, 20727003 - 20727193
Alignment:
| Q |
46 |
ccttgagattttcactaacc--gcttttaaacaggataagctagtaacctttacaaataa-cgagcactctccaaacaaaacaatcttttgtaggatagt |
142 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||| | ||| |
|
|
| T |
20727003 |
ccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaaataagcgagcactcttcaaacaaaacaatcctttgtaaaagagt |
20727102 |
T |
|
| Q |
143 |
ctctaaaactaagagatatcacctctctttaaaccttgggatcgcacccaatacaaaaga--aattacaacaataaaataatacaccaaat |
231 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||| ||||||||||||||||||||||| | | |||||| |||||| ||||||||||||| |
|
|
| T |
20727103 |
ctctaaacccaagagatatcacctctcttgaaactttgggatcgcacccaatacaaaataagagttacaataataaagtaatacaccaaat |
20727193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 76 - 231
Target Start/End: Complemental strand, 24780260 - 24780102
Alignment:
| Q |
76 |
aggataagctagtaacctttacaa-ataacgagcactctccaaacaaaacaatcttttgtaggatagtctctaaaactaagagatatcacctctctttaa |
174 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||| ||||||||||||||||||||| ||||||| | || ||||||| ||||||||||||||||||| | |
|
|
| T |
24780260 |
aggataagctagtaacctttacaagatagcgaacactctccaaacaaaacaatcatttgtagaagagcctctaaactcaagagatatcacctctcttgat |
24780161 |
T |
|
| Q |
175 |
accttgggatcgcacccaatacaaaaga--aattacaacaataaaataatacaccaaat |
231 |
Q |
| |
|
|| ||||||||||||||||||||||| | | |||||| |||||| ||||||||||||| |
|
|
| T |
24780160 |
actttgggatcgcacccaatacaaaataagagttacaataataaagtaatacaccaaat |
24780102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 66 - 199
Target Start/End: Complemental strand, 11023572 - 11023437
Alignment:
| Q |
66 |
gcttttaaacaggataagctagtaacctttacaaataacgagcactctccaaacaaaacaatcttttgtaggatagtctctaaaactaagagatatcacc |
165 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||| ||||||||| ||||||||||||| |||||| | |||||||||||| |||| |||| || |
|
|
| T |
11023572 |
gcttttaaggaggataagctagtaacatttacaaataatgagcactcttcaaacaaaacaattctttgtaaaagagtctctaaaaccaagatatataact |
11023473 |
T |
|
| Q |
166 |
tctctttaaaccttgggat--cgcacccaatacaaa |
199 |
Q |
| |
|
|||||| |||||||||||| | ||||||||||||| |
|
|
| T |
11023472 |
tctcttgaaaccttgggatcacacacccaatacaaa |
11023437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 46 - 231
Target Start/End: Original strand, 89161 - 89348
Alignment:
| Q |
46 |
ccttgagattttcactaacc--gcttttaaacaggataagctagtaacctttacaa-ataacgagcactctccaaacaaaacaatcttttgtaggatagt |
142 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||| ||| ||||||| | || |
|
|
| T |
89161 |
ccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaagatagcgagcactctccaaacaaaacgatcctttgtagaagagc |
89260 |
T |
|
| Q |
143 |
ctctaaaactaagagatatcacctctctttaaaccttgggatcgcacccaatacaaaagaaattacaacaataaaataatacaccaaat |
231 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||||||||||| ||||||||||||||| | |||||| |||||| ||||||||||||| |
|
|
| T |
89261 |
ctctaaacccaagagatatcacctctcttgaaaccttgggattgcacccaatacaaaa-tagttacaataataaagtaatacaccaaat |
89348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 9e-48; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 46 - 231
Target Start/End: Complemental strand, 37439909 - 37439719
Alignment:
| Q |
46 |
ccttgagattttcactaacc--gcttttaaacaggataagctagtaacctttacaaataa-cgagcactctccaaacaaaacaatcttttgtaggatagt |
142 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||| ||||||| | ||| |
|
|
| T |
37439909 |
ccttgagattttcactaacctagcttttaaacaggataagctagtaacctttacaaataagcgagcactcttcaaacaaaataatcctttgtagaagagt |
37439810 |
T |
|
| Q |
143 |
ctctaaaactaagagatatcacctctctttaaaccttgggatcgcacccaatacaaaaga--aattacaacaataaaataatacaccaaat |
231 |
Q |
| |
|
||||||| | ||||||||||||||||||| ||| |||||||||||| |||||||||| | | |||||| |||||| |||||||||||| |
|
|
| T |
37439809 |
ctctaaacccaagagatatcacctctcttgaaaatttgggatcgcacacaatacaaaataagagttacaataataaagcaatacaccaaat |
37439719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 67 - 205
Target Start/End: Original strand, 54001424 - 54001562
Alignment:
| Q |
67 |
cttttaaacaggataagctagtaacctttacaaataacgagcactctccaaacaaaacaatcttttgtaggatagtctctaaaactaagagatatcacct |
166 |
Q |
| |
|
|||||||| ||||||||||| |||||||| ||||||||||||| |||||||||||||||||| ||||||| | | | |||||||| |||||||||||| | |
|
|
| T |
54001424 |
cttttaaataggataagctaataacctttccaaataacgagcattctccaaacaaaacaatcatttgtagaagactttctaaaaccaagagatatcacat |
54001523 |
T |
|
| Q |
167 |
ctctttaaaccttgggatcgcacccaatacaaaagaaat |
205 |
Q |
| |
|
||| | ||||||| ||||||||||||||| ||| |||| |
|
|
| T |
54001524 |
ctcatggaaccttgagatcgcacccaataccaaataaat |
54001562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 199
Target Start/End: Original strand, 39072738 - 39072789
Alignment:
| Q |
148 |
aaactaagagatatcacctctctttaaaccttgggatcgcacccaatacaaa |
199 |
Q |
| |
|
|||| |||||||||||||||| || |||| ||||||||||| |||||||||| |
|
|
| T |
39072738 |
aaaccaagagatatcacctcttttgaaactttgggatcgcatccaatacaaa |
39072789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 46 - 231
Target Start/End: Complemental strand, 18677663 - 18677473
Alignment:
| Q |
46 |
ccttgagattttcactaacc--gcttttaaacaggataagctagtaacctttacaaataa-cgagcactctccaaacaaaacaatcttttgtaggatagt |
142 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||| |||||||||| |||||||||||| | ||||||| | ||| |
|
|
| T |
18677663 |
ccttgagattttcactaacctagcttttaaacgggataagctagtaatatttacaaataaacgagcactcttcaaacaaaacaaacctttgtagaagagt |
18677564 |
T |
|
| Q |
143 |
ctctaaaactaagagatatcacctctctttaaaccttgggatcgcacccaatacaaaaga--aattacaacaataaaataatacaccaaat |
231 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||| |||||||| |||||||||||||| | | |||||| |||||| ||||||||||||| |
|
|
| T |
18677563 |
ctctaaacccaagagatatcacctctcttgaaactttgggatcacacccaatacaaaataagagttacaataataaagtaatacaccaaat |
18677473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 46 - 231
Target Start/End: Complemental strand, 12352623 - 12352437
Alignment:
| Q |
46 |
ccttgagattttcactaacc--gcttttaaacaggataagctagtaacctttacaaataa-cgagcactctccaaacaaaacaatcttttgtaggatagt |
142 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||||| || |||||||| |||||||||| |||||||||||||| |||| || ||| |
|
|
| T |
12352623 |
ccttgagattttcactaacctagcttttaaacgggataagctagtaacatt-acaaataagcgagcactcttcaaacaaaacaatcctttgaag---agt |
12352528 |
T |
|
| Q |
143 |
ctctaaaactaagagatatcacctctctttaaaccttgggatcgcacccaatacaaaaga--aattacaacaataaaataatacaccaaat |
231 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||| |||||||| |||||||||||||| | | | |||| |||||| ||||||||||||| |
|
|
| T |
12352527 |
ctctaaacccaagagatatcacctctcttgaaactttgggatcacacccaatacaaaataagagtaacaataataaagtaatacaccaaat |
12352437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 47 - 200
Target Start/End: Complemental strand, 14859282 - 14859135
Alignment:
| Q |
47 |
cttgagattttcactaaccg--cttttaaacaggataagctagtaacctttacaaataa-cgagcactctccaaacaaaacaatcttttgtaggatagtc |
143 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||| |||||||| ||||||| |||||||||| ||||||||||||| | || |||| |
|
|
| T |
14859282 |
cttgagattttcactaacctaacttttaaacgggataag----taacctttgcaaataaacgagcactcttcaaacaaaacaat-----gaagatgagtc |
14859192 |
T |
|
| Q |
144 |
tctaaaactaagagatatcacctctctttaaaccttgggatcgcacccaatacaaaa |
200 |
Q |
| |
|
|||||| | ||||||||||||||||||| |||| | |||||| |||||||||||||| |
|
|
| T |
14859191 |
tctaaacccaagagatatcacctctcttgaaacttagggatcacacccaatacaaaa |
14859135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 200
Target Start/End: Complemental strand, 24170526 - 24170367
Alignment:
| Q |
46 |
ccttgagattttcactaaccg--cttttaaacaggataagcta--gtaacctttacaa-ataacgagcactctccaaacaaaacaatcttttgtaggata |
140 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||| ||| ||||||||||||| ||| | ||||||| |||||||||| ||| ||| ||| | | |
|
|
| T |
24170526 |
ccttgagattttcactaaccaaacttttaaacaagataaactatagtaacctttacaagatagctagcactccccaaacaaaattatcctttatagaaga |
24170427 |
T |
|
| Q |
141 |
gtctctaaaactaagagatatcacctctctttaaaccttgggatcgcacccaatacaaaa |
200 |
Q |
| |
|
|| |||| | |||| ||||||||||| || ||||||| |||||||||| ||||||||| |
|
|
| T |
24170426 |
acctttaaacccaagatatatcacctcttttgaaaccttaggatcgcacctaatacaaaa |
24170367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 46 - 231
Target Start/End: Complemental strand, 9295 - 9106
Alignment:
| Q |
46 |
ccttgagattttcactaacc--gcttttaaacaggataagctagtaacctttacaaataa-cgagcactctccaaacaaaacaatcttttgtaggatagt |
142 |
Q |
| |
|
|||||||||||||| ||||| |||||||| | ||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||| | || |
|
|
| T |
9295 |
ccttgagattttcattaacctagcttttaatcgggataagctagtaacctttacaaataagcgagcactcttcaaacaaaacaatcctttgtagaagagc |
9196 |
T |
|
| Q |
143 |
ctctaaaactaagagatatcacctctctttaaaccttgggatcgcacccaatacaaaaga-aattacaacaataaaataatacaccaaat |
231 |
Q |
| |
|
||||||| | || ||||||| |||||||| ||||||||||| | |||||||||||||| | | |||||| |||||| ||||||||||||| |
|
|
| T |
9195 |
ctctaaacccaaaagatatcgcctctcttaaaaccttgggaacacacccaatacaaaatagagttacaataataaagtaatacaccaaat |
9106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0882 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0882
Description:
Target: scaffold0882; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 46 - 231
Target Start/End: Original strand, 221 - 410
Alignment:
| Q |
46 |
ccttgagattttcactaacc--gcttttaaacaggataagctagtaacctttacaaataa-cgagcactctccaaacaaaacaatcttttgtaggatagt |
142 |
Q |
| |
|
|||||||||||||| ||||| |||||||||| |||||||| |||||||||||||||||| | |||||||| |||||||||||||| ||||||| | || |
|
|
| T |
221 |
ccttgagattttcattaacctagcttttaaacgggataagccagtaacctttacaaataaacaagcactcttcaaacaaaacaatcctttgtagaagagc |
320 |
T |
|
| Q |
143 |
ctctaaaactaagagatatcacctctctttaaaccttgggatcgcacccaatacaaaaga-aattacaacaataaaataatacaccaaat |
231 |
Q |
| |
|
|||||| | |||||||||||| |||||| |||||||| |||| |||||||||||| | | | |||||| |||||| ||||||||||||| |
|
|
| T |
321 |
ttctaaacccaagagatatcacatctcttgaaaccttgagatcacacccaatacaagatagagttacaataataaagtaatacaccaaat |
410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0766 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0766
Description:
Target: scaffold0766; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 46 - 231
Target Start/End: Complemental strand, 3182 - 2993
Alignment:
| Q |
46 |
ccttgagattttcactaacc--gcttttaaacaggataagctagtaacctttacaaataa-cgagcactctccaaacaaaacaatcttttgtaggatagt |
142 |
Q |
| |
|
|||||||||||||| ||||| |||||||||| |||||||| |||||||||||||||||| | |||||||| |||||||||||||| ||||||| | || |
|
|
| T |
3182 |
ccttgagattttcattaacctagcttttaaacgggataagccagtaacctttacaaataaacaagcactcttcaaacaaaacaatcctttgtagaagagc |
3083 |
T |
|
| Q |
143 |
ctctaaaactaagagatatcacctctctttaaaccttgggatcgcacccaatacaaaaga-aattacaacaataaaataatacaccaaat |
231 |
Q |
| |
|
|||||| | |||||||||||| |||||| |||||||| |||| |||||||||||| | | | |||||| |||||| ||||||||||||| |
|
|
| T |
3082 |
ttctaaacccaagagatatcacatctcttgaaaccttgagatcacacccaatacaagatagagttacaataataaagtaatacaccaaat |
2993 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1744 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold1744
Description:
Target: scaffold1744; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 46 - 205
Target Start/End: Original strand, 268 - 432
Alignment:
| Q |
46 |
ccttgagattttcactaac--cgc-ttttaaacaggataagctagtaacctttacaaa--taacgagcactctccaaacaaaacaatcttttgtaggata |
140 |
Q |
| |
|
||||||||||||||||||| || |||||||| |||||||||||||||||||||||| || |||||||||||||||||||| | | ||||||| | | |
|
|
| T |
268 |
ccttgagattttcactaacttagctttttaaacgggataagctagtaacctttacaaaattagcgagcactctccaaacaaaattaccctttgtagaaga |
367 |
T |
|
| Q |
141 |
gtctctaaaactaagagatatcacctctctttaaaccttgggatcgcacccaatacaaaagaaat |
205 |
Q |
| |
|
| ||||||| ||||||||||||||||||| |||| |||||||| ||||||| ||||||||||| |
|
|
| T |
368 |
gcctctaaactcaagagatatcacctctcttgaaactttgggatcacacccaacacaaaagaaat |
432 |
T |
|
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