View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14437_low_16 (Length: 245)

Name: NF14437_low_16
Description: NF14437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14437_low_16
NF14437_low_16
[»] chr5 (5 HSPs)
chr5 (178-245)||(36948366-36948433)
chr5 (188-245)||(36956442-36956499)
chr5 (92-137)||(36956625-36956670)
chr5 (178-238)||(37066085-37066145)
chr5 (204-245)||(36935588-36935629)
[»] chr2 (1 HSPs)
chr2 (204-245)||(12493341-12493382)


Alignment Details
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 36948433 - 36948366
Alignment:
Q  178 atgctagaacaagaaaggggtagtaggaaatgtaccgcaatggtttgctagttgatgatgatggaagg 245  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36948433 atgctagaaaaagaaaggggtagtaggaaatgtaccgcaatggtatgctagttgatgatgatggaagg 36948366  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 36956499 - 36956442
Alignment:
Q  188 aagaaaggggtagtaggaaatgtaccgcaatggtttgctagttgatgatgatggaagg 245  Q
    |||||| |||||||  ||||||||||||||||| ||||||||||||||||||||||||    
T  36956499 aagaaaagggtagtgagaaatgtaccgcaatggcttgctagttgatgatgatggaagg 36956442  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 36956670 - 36956625
Alignment:
Q  92 tcacacgataagataaacatacatattggtcaaaatagacacacaa 137  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  36956670 tcacacgataagagaaacatacatattggtcaaaatagacacacaa 36956625  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 37066085 - 37066145
Alignment:
Q  178 atgctagaacaagaaaggggtagtaggaaatgtaccgcaatggtttgctagttgatgatga 238  Q
    ||||||||| |||||||||  ||||||||||||| ||||| | ||| ||||||||||||||    
T  37066085 atgctagaaaaagaaagggaaagtaggaaatgtatcgcaaggattttctagttgatgatga 37066145  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 36935629 - 36935588
Alignment:
Q  204 gaaatgtaccgcaatggtttgctagttgatgatgatggaagg 245  Q
    |||||||||||||| || ||||||||||||| ||||||||||    
T  36935629 gaaatgtaccgcaaggggttgctagttgatggtgatggaagg 36935588  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 12493341 - 12493382
Alignment:
Q  204 gaaatgtaccgcaatggtttgctagttgatgatgatggaagg 245  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  12493341 gaaatgtaccgcaatggcttgctagttgatgatgatggaagg 12493382  T

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