View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14437_low_9 (Length: 337)
Name: NF14437_low_9
Description: NF14437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14437_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 52876962 - 52876638
Alignment:
| Q |
1 |
gattcaataaatatctctatcatgagtgagttgtaaaaatcatta--gagacaacaacaaaccatttttcaatgcgttgttgtagaaagtttgttatgga |
98 |
Q |
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| T |
52876962 |
gattcaataaatatctctatcatgagtgagttgtaaaaatcattattgagacaacaa-aaaccatttttcaatgcgttgttgtagaaagtttgttatgga |
52876864 |
T |
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| Q |
99 |
atcaagcaacgtataaagtttgtcaatgacaatacacaatcacaagaaactttgttggaaaaaatgcactatatgtgtttgtgcatacgtcaacatgttc |
198 |
Q |
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| T |
52876863 |
atcaagcaacgtataaagtttgtcaatgacaatacacaatcacaagaaactttgttggaaaaaatgcactatatgtgtttgtgcatacgtcaacatgttc |
52876764 |
T |
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| Q |
199 |
atttttaagtatgtagacaagagggtgaaatgtataaaaaagaaaatcaatggaagtatgaagtcatcaacaaagttaaacctacgactaaaaatcagtg |
298 |
Q |
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| T |
52876763 |
atttttaagtatgtagacaagagggtgaaatgtataaaaaagaaaatcaatgaaagtatgaagtcatcaacaaagttaaacctacgactaaaaatcagtg |
52876664 |
T |
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| Q |
299 |
caacttttgcctttgtttttgaaaag |
324 |
Q |
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|||||||||||||||||||||||||| |
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| T |
52876663 |
caacttttgcctttgtttttgaaaag |
52876638 |
T |
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