View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14438_high_1 (Length: 855)

Name: NF14438_high_1
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14438_high_1
NF14438_high_1
[»] chr6 (13 HSPs)
chr6 (351-828)||(13765748-13766225)
chr6 (107-230)||(13761923-13762047)
chr6 (232-346)||(13762830-13762942)
chr6 (67-109)||(30341421-30341463)
chr6 (67-108)||(15990103-15990144)
chr6 (67-106)||(15508085-15508124)
chr6 (2-51)||(11427673-11427722)
chr6 (64-109)||(31110817-31110862)
chr6 (2-99)||(32869685-32869782)
chr6 (67-106)||(4231548-4231587)
chr6 (2-101)||(22880654-22880753)
chr6 (69-111)||(6209528-6209570)
chr6 (2-51)||(23128123-23128172)
[»] chr7 (18 HSPs)
chr7 (67-115)||(38044188-38044236)
chr7 (2-108)||(8080379-8080485)
chr7 (67-107)||(22343360-22343400)
chr7 (67-107)||(41915740-41915780)
chr7 (2-109)||(38837214-38837321)
chr7 (2-108)||(7389387-7389493)
chr7 (2-107)||(3434561-3434666)
chr7 (2-51)||(3784050-3784099)
chr7 (68-109)||(7727903-7727944)
chr7 (2-51)||(19329897-19329946)
chr7 (2-110)||(40957703-40957811)
chr7 (64-106)||(8238212-8238255)
chr7 (67-106)||(40846174-40846213)
chr7 (2-51)||(3694422-3694471)
chr7 (64-109)||(11044185-11044230)
chr7 (68-109)||(18207177-18207218)
chr7 (2-51)||(19436183-19436232)
chr7 (2-51)||(38267095-38267144)
[»] chr3 (10 HSPs)
chr3 (2-109)||(49607411-49607518)
chr3 (65-106)||(45058611-45058652)
chr3 (2-106)||(53982011-53982115)
chr3 (1-106)||(8076393-8076498)
chr3 (64-108)||(11095411-11095455)
chr3 (64-108)||(33118909-33118953)
chr3 (2-106)||(33644200-33644304)
chr3 (2-102)||(52629304-52629404)
chr3 (2-101)||(48587087-48587186)
chr3 (64-106)||(26141590-26141632)
[»] chr1 (15 HSPs)
chr1 (2-109)||(38595151-38595258)
chr1 (14-111)||(2581910-2582007)
chr1 (2-106)||(3000319-3000423)
chr1 (67-106)||(50591061-50591100)
chr1 (1-107)||(51898678-51898784)
chr1 (68-109)||(5959062-5959103)
chr1 (2-51)||(27564731-27564780)
chr1 (64-109)||(32813244-32813289)
chr1 (65-106)||(47748443-47748484)
chr1 (2-106)||(9474872-9474976)
chr1 (2-106)||(47452316-47452420)
chr1 (67-106)||(41608554-41608593)
chr1 (64-110)||(23597149-23597195)
chr1 (2-51)||(44548372-44548421)
chr1 (2-51)||(50630513-50630562)
[»] chr8 (15 HSPs)
chr8 (67-109)||(16383374-16383416)
chr8 (64-106)||(30479532-30479574)
chr8 (67-108)||(34307214-34307255)
chr8 (70-109)||(24307626-24307665)
chr8 (1-116)||(37038469-37038584)
chr8 (70-108)||(24307857-24307895)
chr8 (65-107)||(32032724-32032766)
chr8 (2-106)||(12831047-12831151)
chr8 (2-106)||(15197333-15197437)
chr8 (2-106)||(34012292-34012396)
chr8 (1-51)||(5957885-5957935)
chr8 (2-108)||(14547920-14548026)
chr8 (64-106)||(15048239-15048281)
chr8 (2-51)||(9122240-9122289)
chr8 (2-51)||(44507083-44507132)
[»] chr5 (15 HSPs)
chr5 (67-109)||(3921326-3921368)
chr5 (2-108)||(36732938-36733044)
chr5 (2-107)||(2740273-2740378)
chr5 (2-106)||(40145407-40145511)
chr5 (2-101)||(18520880-18520979)
chr5 (67-107)||(2252229-2252269)
chr5 (14-106)||(14831814-14831906)
chr5 (2-106)||(33149634-33149738)
chr5 (64-111)||(28177770-28177817)
chr5 (64-106)||(26720516-26720558)
chr5 (64-106)||(26990265-26990307)
chr5 (1-51)||(31009043-31009093)
chr5 (70-108)||(39688961-39688999)
chr5 (64-106)||(42414360-42414402)
chr5 (64-101)||(36875661-36875698)
[»] chr4 (19 HSPs)
chr4 (67-109)||(19670777-19670819)
chr4 (2-106)||(6034044-6034148)
chr4 (2-106)||(11511458-11511562)
chr4 (1-109)||(50052423-50052531)
chr4 (64-108)||(55475189-55475233)
chr4 (2-119)||(29234241-29234356)
chr4 (65-107)||(44536804-44536846)
chr4 (2-108)||(48183045-48183151)
chr4 (68-106)||(55079776-55079814)
chr4 (1-106)||(3481654-3481759)
chr4 (70-123)||(29548023-29548076)
chr4 (67-108)||(32766956-32766997)
chr4 (70-107)||(47986207-47986244)
chr4 (2-106)||(41236347-41236451)
chr4 (2-109)||(480443-480550)
chr4 (2-109)||(42044363-42044470)
chr4 (64-106)||(8343221-8343263)
chr4 (68-110)||(29239882-29239924)
chr4 (2-51)||(24995103-24995152)
[»] chr2 (14 HSPs)
chr2 (2-107)||(5574484-5574589)
chr2 (2-106)||(17473020-17473124)
chr2 (1-109)||(33436095-33436203)
chr2 (2-101)||(28863460-28863559)
chr2 (2-108)||(9058478-9058584)
chr2 (1-111)||(27864699-27864809)
chr2 (2-108)||(30915461-30915567)
chr2 (67-116)||(43490111-43490160)
chr2 (70-109)||(45097799-45097838)
chr2 (2-108)||(10249378-10249484)
chr2 (67-109)||(26891565-26891607)
chr2 (64-106)||(40613960-40614002)
chr2 (2-51)||(13438398-13438447)
chr2 (64-101)||(19930878-19930915)
[»] scaffold0321 (1 HSPs)
scaffold0321 (64-109)||(10167-10212)


Alignment Details
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 351 - 828
Target Start/End: Original strand, 13765748 - 13766225
Alignment:
Q  351 ggctaagggaagggatcttgttgtggtggaggtagctaataagaaccagtgtttggcgtatttgtggactattttgaagatctaagactcgtagatgttc 450  Q
    ||||||||| |||||||||||| | |||||||||||| ||||||||||||||||||| |||||||  ||| |||||| |||| |||||||| ||||||||    
T  13765748 ggctaaggggagggatcttgtttttgtggaggtagctgataagaaccagtgtttggcctatttgtaaactgttttgacgatccaagactcgcagatgttc 13765847  T
Q  451 caatggtcaagagcaaaatggttgagagagagaaggacataatacaacttatttccacgcctgtgtgaagaatagaggtatgaggaattccatctcggca 550  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  13765848 caatggtcaagagcaaagtggttgagagagagaaggacataatacaacttatttcctcgcctgtgtgaagaatagaggtatgaggaattccatctcggct 13765947  T
Q  551 cctagggtggaaaggtggatggaggatgttgcaaagatcaaacaagcgattgtgaatttctttacgcatcatttctcagacccatagacctatagaccga 650  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13765948 cctagggtggaaaggtggatggatgatgttgcaaagaacaaacaagcgattgtgaatttctttacgcatcatttctcagacccatagacctatagaccga 13766047  T
Q  651 ccatggtcgatattgatttcattcatatttctaatttggataatgtcctgttgttagctctagtcttggtttcaaaaatggaattggtggtttctagtgt 750  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||| ||||||| ||||| | ||||||||||||||||||||||||||||||||||| |    
T  13766048 ccatgggcgatattgatttctttcatatttctaatttggataatgttctgttgtcagctcaattcttggtttcaaaaatggaattggtggtttctagtct 13766147  T
Q  751 ggatggtaacgagatccctataccggacggatttaatctcaacttctttacacggttgcgaaatatgttgaaagctga 828  Q
    |||||||||||||| |||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  13766148 ggatggtaacgagagccctaggccggacggatttaatctcaacttctttatacggttgcgaaatatgttgaaagctga 13766225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 107 - 230
Target Start/End: Original strand, 13761923 - 13762047
Alignment:
Q  107 tttaatttttaatggttttggattataaaatcatttactcatttaatgtattcgatttcattg-ttttacggacatggtgcttcatcattggtcggctcc 205  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  13761923 tttaatttttagtggttttggattctaaaatcatttactcatttaatgtattcgatttcattggttttacgaacatggtgcttcatcattggtcggctcc 13762022  T
Q  206 cactcaagcgggttggatgacctat 230  Q
    |||||||||||||||||||||||||    
T  13762023 cactcaagcgggttggatgacctat 13762047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 232 - 346
Target Start/End: Original strand, 13762830 - 13762942
Alignment:
Q  232 ggtcaaaggcaaagttagagtcttaaggttgtcctaaaggggtggattaagtagacttttagaaatatggactttagactaggggagttcagagataata 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||| ||||||||||    
T  13762830 ggtcaaaggcaaagttagagtcttaaggttgtcctaaaggggtggattaaggagac--ttagaaatatggactttagactaggggagttgagagataata 13762927  T
Q  332 tcaaggatctggatg 346  Q
    |||||||||||||||    
T  13762928 tcaaggatctggatg 13762942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 109
Target Start/End: Original strand, 30341421 - 30341463
Alignment:
Q  67 gggtgtattgccacctaatggtgtttatgtatcataactcttt 109  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  30341421 gggtgtattgccacctaagggtgtttatgtatcataactcttt 30341463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 108
Target Start/End: Original strand, 15990103 - 15990144
Alignment:
Q  67 gggtgtattgccacctaatggtgtttatgtatcataactctt 108  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  15990103 gggtgtattgccacctaagggtgtttatgtatcataactctt 15990144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 15508085 - 15508124
Alignment:
Q  67 gggtgtattgccacctaatggtgtttatgtatcataactc 106  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  15508085 gggtgtattgccacctaagggtgtttatgtatcataactc 15508124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 11427722 - 11427673
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagatttt 51  Q
    ||||||||| | |||||||||||||||||||||| || ||||||||||||    
T  11427722 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttt 11427673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 31110817 - 31110862
Alignment:
Q  64 aaagggtgtattgccacctaatggtgtttatgtatcataactcttt 109  Q
    ||||||||||||||||||||| | ||| ||||||||||||||||||    
T  31110817 aaagggtgtattgccacctaaggatgtctatgtatcataactcttt 31110862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 32869782 - 32869685
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatc 99  Q
    ||||||||| | |||||||||||| ||||||||| || ||||||||||||            ||||||||||||||||||||| ||||| ||||||||    
T  32869782 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatc 32869685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 106
Target Start/End: Complemental strand, 4231587 - 4231548
Alignment:
Q  67 gggtgtattgccacctaatggtgtttatgtatcataactc 106  Q
    |||||||||||||||||||| |||||||| ||||||||||    
T  4231587 gggtgtattgccacctaatgatgtttatgaatcataactc 4231548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 22880654 - 22880753
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | |||||||||||| ||||||||| || |||||||| |||            ||||||||||||||||||||| ||||| ||||||||||    
T  22880654 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagaattttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 22880753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 6209528 - 6209570
Alignment:
Q  69 gtgtattgccacctaatggtgtttatgtatcataactctttaa 111  Q
    |||||||||||||||| ||||| |||||||||| |||||||||    
T  6209528 gtgtattgccacctaagggtgtctatgtatcattactctttaa 6209570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 23128123 - 23128172
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagatttt 51  Q
    ||||||||| | |||||||| ||||||||||||| || ||||||||||||    
T  23128123 aaagagaaagtgtgcttgtgtgggatccacgtgactacgtgtcagatttt 23128172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 38044236 - 38044188
Alignment:
Q  67 gggtgtattgccacctaatggtgtttatgtatcataactctttaatttt 115  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  38044236 gggtgtattgccacctaagggtgtttatgtatcataactcttcaatttt 38044188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 8080379 - 8080485
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | |||||||||||| ||||||||| || ||||||||||||            ||||||||||||||||||||| ||||| ||||||||||    
T  8080379 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 8080478  T
Q  102 aactctt 108  Q
     ||||||    
T  8080479 tactctt 8080485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 22343400 - 22343360
Alignment:
Q  67 gggtgtattgccacctaatggtgtttatgtatcataactct 107  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  22343400 gggtgtattgccacctaagggtgtttatgtatcataactct 22343360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 41915780 - 41915740
Alignment:
Q  67 gggtgtattgccacctaatggtgtttatgtatcataactct 107  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  41915780 gggtgtattgccacctaagggtgtttatgtatcataactct 41915740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 109
Target Start/End: Complemental strand, 38837321 - 38837214
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | |||||||||||| ||||||||| || ||||||||||||             |||||||||||||||||||| ||||| ||||||||||    
T  38837321 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtaggtgtacaagggtgtattgccacctaagggtgtctatgtatcat 38837222  T
Q  102 aactcttt 109  Q
     |||||||    
T  38837221 tactcttt 38837214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 7389493 - 7389387
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | |||||||||||| ||||||||| || ||||||||||||            |||| |||||||||||||||| ||||| ||||||||||    
T  7389493 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaagggtgtctatgtatcat 7389394  T
Q  102 aactctt 108  Q
     ||||||    
T  7389393 tactctt 7389387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 3434666 - 3434561
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | |||||||||||||||||||||| || ||||||| ||||            ||||||||||||||||||||| | ||| ||||||||||    
T  3434666 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagttttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcat 3434567  T
Q  102 aactct 107  Q
     |||||    
T  3434566 tactct 3434561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 3784099 - 3784050
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagatttt 51  Q
    ||||||||| | |||||||||||||||||||||| || ||||||||||||    
T  3784099 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttt 3784050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 7727944 - 7727903
Alignment:
Q  68 ggtgtattgccacctaatggtgtttatgtatcataactcttt 109  Q
    |||||||| |||||||| ||||||||||||||||||||||||    
T  7727944 ggtgtattaccacctaagggtgtttatgtatcataactcttt 7727903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 19329946 - 19329897
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagatttt 51  Q
    ||||||||| | |||||||||||| |||||||||||| ||||||||||||    
T  19329946 aaagagaaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttt 19329897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 40957811 - 40957703
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | ||||||| |||||||||||||| || ||||||||||||            |||| ||||||||||||||||  |||| ||||||||||    
T  40957811 aaagagaaagtgtgcttgtacgggatccacgtgactacgtgtcagatttttgtgtgggtatcaaagagtgtattgccacctaagagtgtctatgtatcat 40957712  T
Q  102 aactcttta 110  Q
     ||||||||    
T  40957711 tactcttta 40957703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 8238255 - 8238212
Alignment:
Q  64 aaagggtgtattgccaccta-atggtgtttatgtatcataactc 106  Q
    |||||||||||||||||||| | |||||||||||||||||||||    
T  8238255 aaagggtgtattgccacctacagggtgtttatgtatcataactc 8238212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 40846174 - 40846213
Alignment:
Q  67 gggtgtattgccacctaatggtgtttatgtatcataactc 106  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  40846174 gggtgtattgccacctaaggatgtttatgtatcataactc 40846213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 3694471 - 3694422
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagatttt 51  Q
    ||||||||| | |||||||||||||||||| ||| || ||||||||||||    
T  3694471 aaagagaaagtgtgcttgtgcgggatccacatgactacgtgtcagatttt 3694422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 11044230 - 11044185
Alignment:
Q  64 aaagggtgtattgccacctaatggtgtttatgtatcataactcttt 109  Q
    ||||| ||||||||||||||| ||||| |||||||||| |||||||    
T  11044230 aaaggatgtattgccacctaagggtgtctatgtatcattactcttt 11044185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 18207218 - 18207177
Alignment:
Q  68 ggtgtattgccacctaatggtgtttatgtatcataactcttt 109  Q
    ||||||||||||||||| | ||| ||||||||||||||||||    
T  18207218 ggtgtattgccacctaaggttgtctatgtatcataactcttt 18207177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 19436183 - 19436232
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagatttt 51  Q
    ||||||||| | ||||| |||||||||||||||| || ||||||||||||    
T  19436183 aaagagaaagtgtgcttatgcgggatccacgtgactacgtgtcagatttt 19436232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 38267144 - 38267095
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagatttt 51  Q
    ||||||||| | |||||||||||| ||||||||| || ||||||||||||    
T  38267144 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttt 38267095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 109
Target Start/End: Complemental strand, 49607518 - 49607411
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | |||||||| ||||||||||||| || ||||||||||||            ||||||||||||||||||||| ||||| ||||||||||    
T  49607518 aaagagaaagtgtgcttgtgtgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 49607419  T
Q  102 aactcttt 109  Q
     |||||||    
T  49607418 tactcttt 49607411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 45058611 - 45058652
Alignment:
Q  65 aagggtgtattgccacctaatggtgtttatgtatcataactc 106  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  45058611 aagggtgtattgccacctaagggtgtttatgtatcataactc 45058652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 53982115 - 53982011
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | |||||||||||| ||||||||| || ||||||||||||            ||||||||||||||||||||| ||||| ||||||||||    
T  53982115 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 53982016  T
Q  102 aactc 106  Q
     ||||    
T  53982015 tactc 53982011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 8076498 - 8076393
Alignment:
Q  1 gaaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatca 100  Q
    |||||||||| | |||||||||||| ||||||||| || |||| |||||||            |||||||||| |||||||||| |||||||||||||||    
T  8076498 gaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaagggtgtttatgtatca 8076399  T
Q  101 taactc 106  Q
    | ||||    
T  8076398 ttactc 8076393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 11095411 - 11095455
Alignment:
Q  64 aaagggtgtattgccacctaatggtgtttatgtatcataactctt 108  Q
    ||||||||||||||||||||| ||||| |||||||||| ||||||    
T  11095411 aaagggtgtattgccacctaagggtgtctatgtatcattactctt 11095455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 33118909 - 33118953
Alignment:
Q  64 aaagggtgtattgccacctaatggtgtttatgtatcataactctt 108  Q
    ||||||||||||| ||||||| ||||| |||||||||||||||||    
T  33118909 aaagggtgtattgtcacctaagggtgtctatgtatcataactctt 33118953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 33644304 - 33644200
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | |||||||||||| ||||||||| || ||||||||||||            |||||||||||||||||| || ||||| ||||||||||    
T  33644304 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacccaagggtgtctatgtatcat 33644205  T
Q  102 aactc 106  Q
     ||||    
T  33644204 tactc 33644200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 52629404 - 52629304
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | ||||||| |||| ||||||||| || ||||||||||||            ||||||||||||||||||||| ||||| ||||||||||    
T  52629404 aaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 52629305  T
Q  102 a 102  Q
    |    
T  52629304 a 52629304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 48587087 - 48587186
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | | |||||||||||||||||||| || ||||||||||||            ||||||||||||||||||||| ||| | ||||||||||    
T  48587087 aaagagaaagtgtacttgtgcgggatccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtatctatgtatcat 48587186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 26141590 - 26141632
Alignment:
Q  64 aaagggtgtattgccacctaatggtgtttatgtatcataactc 106  Q
    ||||||||||||||||||||| | ||| |||||||||||||||    
T  26141590 aaagggtgtattgccacctaaggatgtctatgtatcataactc 26141632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 109
Target Start/End: Complemental strand, 38595258 - 38595151
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | ||||||| |||| ||||||||| || ||||||||||||            ||||||||||||||||||||| ||||||||||||||||    
T  38595258 aaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaaggtgtttatgtatcat 38595159  T
Q  102 aactcttt 109  Q
     |||||||    
T  38595158 tactcttt 38595151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 2582007 - 2581910
Alignment:
Q  14 tgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcataactctttaa 111  Q
    |||||||||||| ||||||||| || ||||||||||||            ||||||||||||||||||||| ||||| |||||||||| |||||||||    
T  2582007 tgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctttaa 2581910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 3000423 - 3000319
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | ||||||| |||| ||||||||| || ||||||||||||            ||||||||||||||||||||| ||||||||||||||||    
T  3000423 aaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtttatgtatcat 3000324  T
Q  102 aactc 106  Q
     ||||    
T  3000323 tactc 3000319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 50591061 - 50591100
Alignment:
Q  67 gggtgtattgccacctaatggtgtttatgtatcataactc 106  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  50591061 gggtgtattgccacctaagggtgtttatgtatcataactc 50591100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 51898678 - 51898784
Alignment:
Q  1 gaaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatca 100  Q
    |||| ||||| | |||||||||||||||||||||| || ||||||||||||            ||||||||||||||||||||| | ||| |||||||||    
T  51898678 gaaatagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatca 51898777  T
Q  101 taactct 107  Q
    | |||||    
T  51898778 ttactct 51898784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 5959062 - 5959103
Alignment:
Q  68 ggtgtattgccacctaatggtgtttatgtatcataactcttt 109  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  5959062 ggtgtattgccacttaagggtgtttatgtatcataactcttt 5959103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 27564731 - 27564780
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagatttt 51  Q
    ||||||||| | |||||||||||| |||||||||||| ||||||||||||    
T  27564731 aaagagaaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttt 27564780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 32813289 - 32813244
Alignment:
Q  64 aaagggtgtattgccacctaatggtgtttatgtatcataactcttt 109  Q
    ||||||||||||||||||||| | ||| ||||||||||||||||||    
T  32813289 aaagggtgtattgccacctaaggatgtctatgtatcataactcttt 32813244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 47748484 - 47748443
Alignment:
Q  65 aagggtgtattgccacctaatggtgtttatgtatcataactc 106  Q
    |||||||||||||||||||| ||| |||||||||||||||||    
T  47748484 aagggtgtattgccacctaagggtatttatgtatcataactc 47748443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 9474872 - 9474976
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | || ||||||||| ||||||||| || ||||||||||||            ||||||||||||||||||||| ||||| ||||||||||    
T  9474872 aaagagaaagtgtgtttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 9474971  T
Q  102 aactc 106  Q
     ||||    
T  9474972 tactc 9474976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 47452316 - 47452420
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | |||||||||||||||||||||| || |||| |||||||            |||||||||||| |||||||| ||||| ||||||||||    
T  47452316 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcat 47452415  T
Q  102 aactc 106  Q
     ||||    
T  47452416 tactc 47452420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 41608554 - 41608593
Alignment:
Q  67 gggtgtattgccacctaatggtgtttatgtatcataactc 106  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  41608554 gggtgtattgccacctaaggatgtttatgtatcataactc 41608593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 23597149 - 23597195
Alignment:
Q  64 aaagggtgtattgccacctaatggtgtttatgtatcataactcttta 110  Q
    |||| |||||||||||||||||| ||| |||||||||| ||||||||    
T  23597149 aaagagtgtattgccacctaatgatgtctatgtatcattactcttta 23597195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 44548372 - 44548421
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagatttt 51  Q
    ||||||||| | |||||||||||| ||||||||| || ||||||||||||    
T  44548372 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttt 44548421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 50630562 - 50630513
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagatttt 51  Q
    ||||||||| | |||||||||||| ||||||||| || ||||||||||||    
T  50630562 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttt 50630513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 109
Target Start/End: Complemental strand, 16383416 - 16383374
Alignment:
Q  67 gggtgtattgccacctaatggtgtttatgtatcataactcttt 109  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  16383416 gggtgtattgccacctaagggtgtttatgtatcataactcttt 16383374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 30479532 - 30479574
Alignment:
Q  64 aaagggtgtattgccacctaatggtgtttatgtatcataactc 106  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  30479532 aaagggtgtattgccacctaagggtgtttatgtatcataactc 30479574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 34307255 - 34307214
Alignment:
Q  67 gggtgtattgccacctaatggtgtttatgtatcataactctt 108  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  34307255 gggtgtattgccacctaagggtgtttatgtatcataactctt 34307214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 24307665 - 24307626
Alignment:
Q  70 tgtattgccacctaatggtgtttatgtatcataactcttt 109  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  24307665 tgtattgccacctaagggtgtttatgtatcataactcttt 24307626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 37038584 - 37038469
Alignment:
Q  1 gaaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatca 100  Q
    |||| ||||| | |||||||||||||||||||||| || ||||||||||||            ||||||||||||||||||||| | ||| |||||||||    
T  37038584 gaaatagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatca 37038485  T
Q  101 taactctttaattttt 116  Q
    | ||||| | ||||||    
T  37038484 ttactctattattttt 37038469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 108
Target Start/End: Original strand, 24307857 - 24307895
Alignment:
Q  70 tgtattgccacctaatggtgtttatgtatcataactctt 108  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  24307857 tgtattgccacctaagggtgtttatgtatcataactctt 24307895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 107
Target Start/End: Complemental strand, 32032766 - 32032724
Alignment:
Q  65 aagggtgtattgccacctaatggtgtttatgtatcataactct 107  Q
    |||| ||||||||||||||| ||||||||||||||||||||||    
T  32032766 aaggatgtattgccacctaagggtgtttatgtatcataactct 32032724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 12831151 - 12831047
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | |||||||||||| ||||||||| || ||||||||||||            ||||||||||||| ||||||| ||||| ||||||||||    
T  12831151 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcat 12831052  T
Q  102 aactc 106  Q
     ||||    
T  12831051 tactc 12831047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 15197437 - 15197333
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | |||||||||||| ||||||||| || ||||||||||||            |||||||||||||||||||||  |||| ||||||||||    
T  15197437 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcat 15197338  T
Q  102 aactc 106  Q
     ||||    
T  15197337 tactc 15197333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 34012292 - 34012396
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | |||||||||||||||||||||| || |||||| |||||            |||||||||||| |||||||| ||||| ||||||||||    
T  34012292 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcat 34012391  T
Q  102 aactc 106  Q
     ||||    
T  34012392 tactc 34012396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 5957935 - 5957885
Alignment:
Q  1 gaaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagatttt 51  Q
    |||||||||| | || ||||||||||||||||||| || ||||||||||||    
T  5957935 gaaagagaaagtgtgattgtgcgggatccacgtgactacgtgtcagatttt 5957885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 14548026 - 14547920
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | |||||||||||| ||||||||| || ||||||||||||            ||| ||||||||||||||||| ||||| |||||||| |    
T  14548026 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaagggtgtctatgtatctt 14547927  T
Q  102 aactctt 108  Q
     ||||||    
T  14547926 tactctt 14547920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 15048239 - 15048281
Alignment:
Q  64 aaagggtgtattgccacctaatggtgtttatgtatcataactc 106  Q
    ||||||||||||||||||||| | ||| |||||||||||||||    
T  15048239 aaagggtgtattgccacctaaggatgtctatgtatcataactc 15048281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 9122289 - 9122240
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagatttt 51  Q
    ||||||||| | |||||||||||||||||||||| ||  |||||||||||    
T  9122289 aaagagaaagtgtgcttgtgcgggatccacgtgactacatgtcagatttt 9122240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 44507083 - 44507132
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagatttt 51  Q
    ||||||||| ||||||||| |||| ||||||||| || ||||||||||||    
T  44507083 aaagagaaagtatgcttgtacggggtccacgtgactacgtgtcagatttt 44507132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 109
Target Start/End: Original strand, 3921326 - 3921368
Alignment:
Q  67 gggtgtattgccacctaatggtgtttatgtatcataactcttt 109  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  3921326 gggtgtattgccacctaagggtgtttatgtatcataactcttt 3921368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 36732938 - 36733044
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | |||||||||||| ||||||||| |||||||||||||||            |||||||||||||| |||||| ||||| ||||||||||    
T  36732938 aaagagaaagtgtgcttgtgcggggtccacgtgactatgtgtcagatttttgtgtgggtgtcaaagggtgtattgctacctaagggtgtctatgtatcat 36733037  T
Q  102 aactctt 108  Q
     ||||||    
T  36733038 tactctt 36733044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 2740378 - 2740273
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | |||||||||||||||||||||| || ||||||||||||            ||||||||||||||||||||| | ||| ||||||||||    
T  2740378 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcat 2740279  T
Q  102 aactct 107  Q
     |||||    
T  2740278 tactct 2740273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 40145511 - 40145407
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | |||||||||||| ||||||||| || ||||||||||||            ||||||||||||||||||||| ||||| ||||||||||    
T  40145511 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaagggtgtattgccacctaagggtgtctatgtatcat 40145412  T
Q  102 aactc 106  Q
     ||||    
T  40145411 tactc 40145407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 18520880 - 18520979
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | |||||||||||| ||||||||| || ||||||||||||            ||||||||||||||||||||| ||||| ||||||||||    
T  18520880 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 18520979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 2252229 - 2252269
Alignment:
Q  67 gggtgtattgccacctaatggtgtttatgtatcataactct 107  Q
    |||||||||||||||||| | ||||||||||||||||||||    
T  2252229 gggtgtattgccacctaaggatgtttatgtatcataactct 2252269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 14831906 - 14831814
Alignment:
Q  14 tgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcataactc 106  Q
    |||||||||||||||||||||| || ||||||||||||            |||||||||||||||||||||  |||| |||||||||| ||||    
T  14831906 tgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactc 14831814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 33149634 - 33149738
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | |||||||||||||||||||||| || |||||| |||||            |||||||||||| |||||||| ||||| ||||||||||    
T  33149634 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcat 33149733  T
Q  102 aactc 106  Q
     ||||    
T  33149734 tactc 33149738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 28177817 - 28177770
Alignment:
Q  64 aaagggtgtattgccacctaatggtgtttatgtatcataactctttaa 111  Q
    ||||||||||||||||||||| | ||| ||||||||||||||| ||||    
T  28177817 aaagggtgtattgccacctaaggatgtctatgtatcataactcattaa 28177770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 26720558 - 26720516
Alignment:
Q  64 aaagggtgtattgccacctaatggtgtttatgtatcataactc 106  Q
    ||||||||||||||||||||| | ||| |||||||||||||||    
T  26720558 aaagggtgtattgccacctaaggatgtctatgtatcataactc 26720516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 26990307 - 26990265
Alignment:
Q  64 aaagggtgtattgccacctaatggtgtttatgtatcataactc 106  Q
    ||||||||||||||||||||| | ||| |||||||||||||||    
T  26990307 aaagggtgtattgccacctaaggatgtctatgtatcataactc 26990265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 31009093 - 31009043
Alignment:
Q  1 gaaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagatttt 51  Q
    |||| ||||| | |||||||||||||||||||||| || ||||||||||||    
T  31009093 gaaatagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttt 31009043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 108
Target Start/End: Original strand, 39688961 - 39688999
Alignment:
Q  70 tgtattgccacctaatggtgtttatgtatcataactctt 108  Q
    ||||||||||| ||| |||||||||||||||||||||||    
T  39688961 tgtattgccacttaagggtgtttatgtatcataactctt 39688999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 42414360 - 42414402
Alignment:
Q  64 aaagggtgtattgccacctaatggtgtttatgtatcataactc 106  Q
    |||||||||||||||||||| |||||| |||||||||| ||||    
T  42414360 aaagggtgtattgccacctactggtgtctatgtatcattactc 42414402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 101
Target Start/End: Original strand, 36875661 - 36875698
Alignment:
Q  64 aaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  36875661 aaagggtgtattgccacctaagggtgtctatgtatcat 36875698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 109
Target Start/End: Original strand, 19670777 - 19670819
Alignment:
Q  67 gggtgtattgccacctaatggtgtttatgtatcataactcttt 109  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  19670777 gggtgtattgccacctaagggtgtttatgtatcataactcttt 19670819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 6034148 - 6034044
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | |||||||||||||||||||||| ||  |||||||||||            ||||||||||||||||||||| ||||| ||||||||||    
T  6034148 aaagagaaagtgtgcttgtgcgggatccacgtgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 6034049  T
Q  102 aactc 106  Q
     ||||    
T  6034048 tactc 6034044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 11511458 - 11511562
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | |||||||||||| ||||||||| || ||||||||||||            ||||||||||||||||||||| ||||| ||||||||||    
T  11511458 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 11511557  T
Q  102 aactc 106  Q
     ||||    
T  11511558 tactc 11511562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 50052423 - 50052531
Alignment:
Q  1 gaaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatca 100  Q
    |||||||||| | |||||||||||| ||||||||| || ||||||||||||            ||||||||||||||||||||| | ||| |||||||||    
T  50052423 gaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatca 50052522  T
Q  101 taactcttt 109  Q
    | |||||||    
T  50052523 ttactcttt 50052531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 55475233 - 55475189
Alignment:
Q  64 aaagggtgtattgccacctaatggtgtttatgtatcataactctt 108  Q
    ||||||||||||||||||||| | |||||||||||||||||||||    
T  55475233 aaagggtgtattgccacctaaggatgtttatgtatcataactctt 55475189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 119
Target Start/End: Original strand, 29234241 - 29234356
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | |||||||||||| ||||||||| || ||||||||||||            |||||||||||||||| |||| ||||| ||||||||||    
T  29234241 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgaaggtatcaaagggtgtattgccatctaagggtgtctatgtatcat 29234340  T
Q  102 aactctttaatttttaat 119  Q
     ||||  |||||||||||    
T  29234341 tactc--taatttttaat 29234356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 107
Target Start/End: Original strand, 44536804 - 44536846
Alignment:
Q  65 aagggtgtattgccacctaatggtgtttatgtatcataactct 107  Q
    ||||||||||||||||||||  |||||||||||||||||||||    
T  44536804 aagggtgtattgccacctaaaagtgtttatgtatcataactct 44536846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 48183045 - 48183151
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | |||||||||||| ||||||||| || ||||||||||||            ||||||||||||||||| ||| ||||| ||||||||||    
T  48183045 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacgtaagggtgtctatgtatcat 48183144  T
Q  102 aactctt 108  Q
     ||||||    
T  48183145 tactctt 48183151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 106
Target Start/End: Original strand, 55079776 - 55079814
Alignment:
Q  68 ggtgtattgccacctaatggtgtttatgtatcataactc 106  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  55079776 ggtgtattgccacctaagggtgtttatgtatcataactc 55079814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 3481759 - 3481654
Alignment:
Q  1 gaaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatca 100  Q
    |||||||||| | |||||||| ||| ||||||||| |||||||||||||||            |||| |||||||||||||||| ||||| |||||||||    
T  3481759 gaaagagaaagtgtgcttgtgtggggtccacgtgactatgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaaggtgtctatgtatca 3481660  T
Q  101 taactc 106  Q
    | ||||    
T  3481659 ttactc 3481654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 29548023 - 29548076
Alignment:
Q  70 tgtattgccacctaatggtgtttatgtatcataactctttaatttttaatggtt 123  Q
    ||||||||||||||| | ||||||||||||||||||||| ||||| || |||||    
T  29548023 tgtattgccacctaaggatgtttatgtatcataactcttaaatttatagtggtt 29548076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 32766997 - 32766956
Alignment:
Q  67 gggtgtattgccacctaatggtgtttatgtatcataactctt 108  Q
    ||||||||||||||||||  ||||||||||||||||||||||    
T  32766997 gggtgtattgccacctaagagtgtttatgtatcataactctt 32766956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 47986244 - 47986207
Alignment:
Q  70 tgtattgccacctaatggtgtttatgtatcataactct 107  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  47986244 tgtattgccacctaagggtgtttatgtatcataactct 47986207  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 41236451 - 41236347
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | |||||||||||| ||||||||| || ||||||||||||            ||| ||||||||||||||||| ||||| ||||||||||    
T  41236451 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaaaggtgtattgccacctaagggtgtctatgtatcat 41236352  T
Q  102 aactc 106  Q
     ||||    
T  41236351 tactc 41236347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 109
Target Start/End: Original strand, 480443 - 480550
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | ||||||| |||| ||||||||| || ||||||||||||            ||||||||||||| ||||||| ||||| ||||||||||    
T  480443 aaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcat 480542  T
Q  102 aactcttt 109  Q
     |||||||    
T  480543 tactcttt 480550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 109
Target Start/End: Original strand, 42044363 - 42044470
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | |||||||||||| ||||||||| || ||||||||||||             |||| ||||||||||||||| ||||| ||||||||||    
T  42044363 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtacaaggatgtattgccacctaagggtgtctatgtatcat 42044462  T
Q  102 aactcttt 109  Q
     |||||||    
T  42044463 tactcttt 42044470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 8343221 - 8343263
Alignment:
Q  64 aaagggtgtattgccacctaatggtgtttatgtatcataactc 106  Q
    ||||| ||||||||||||||| | |||||||||||||||||||    
T  8343221 aaaggatgtattgccacctaaggatgtttatgtatcataactc 8343263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 29239924 - 29239882
Alignment:
Q  68 ggtgtattgccacctaatggtgtttatgtatcataactcttta 110  Q
    ||||||||||||||||| ||||| |||||||||| ||||||||    
T  29239924 ggtgtattgccacctaagggtgtctatgtatcattactcttta 29239882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 24995103 - 24995152
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagatttt 51  Q
    ||||||||||| |||||||||||| ||||||||| || |||||| |||||    
T  24995103 aaagagaaaatgtgcttgtgcggggtccacgtgactacgtgtcaaatttt 24995152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 5574484 - 5574589
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | |||||||||||||||||||||| || ||||||||||||            |||||||||||||||||||||  |||| ||||||||||    
T  5574484 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcat 5574583  T
Q  102 aactct 107  Q
     |||||    
T  5574584 tactct 5574589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 17473124 - 17473020
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | |||||||||||||||||||||| || ||||||||||||            |||||||||||||||| |||| ||||| ||||||||||    
T  17473124 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcat 17473025  T
Q  102 aactc 106  Q
     ||||    
T  17473024 tactc 17473020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 33436095 - 33436203
Alignment:
Q  1 gaaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatca 100  Q
    |||||||||| | |||||||||||| ||||||||| || |||| |||||||            ||||||||||||||||||||| ||||| |||||||||    
T  33436095 gaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatca 33436194  T
Q  101 taactcttt 109  Q
    | |||||||    
T  33436195 ttactcttt 33436203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 28863559 - 28863460
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | |||||||||||| ||||||||| || ||||||||||||            ||||||||||||||||||||| ||||| ||||||||||    
T  28863559 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 28863460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 9058584 - 9058478
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | |||||||||||| ||||| ||| || ||||||||||||            ||||||||||||||||||||| ||||| ||||||||||    
T  9058584 aaagagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 9058485  T
Q  102 aactctt 108  Q
     ||||||    
T  9058484 tactctt 9058478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 27864809 - 27864699
Alignment:
Q  1 gaaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatca 100  Q
    |||||||||| | ||||| |||||| |||||||||||| ||||||||||||            ||||||||||||||||| ||| ||||| |||||||||    
T  27864809 gaaagagaaagtgtgcttttgcggggtccacgtgattacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacataagggtgtctatgtatca 27864710  T
Q  101 taactctttaa 111  Q
    | |||| ||||    
T  27864709 ttactcattaa 27864699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 30915567 - 30915461
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | ||||||| |||| ||||||||| || ||||||||||||            ||||||||||||||||||||| ||||| ||||||||||    
T  30915567 aaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttatgtgggggtcaaagggtgtattgccacctaagggtgtctatgtatcat 30915468  T
Q  102 aactctt 108  Q
     ||||||    
T  30915467 tactctt 30915461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 43490160 - 43490111
Alignment:
Q  67 gggtgtattgccacctaatggtgtttatgtatcataactctttaattttt 116  Q
    |||||||||| ||||||| ||||||||||||||||||||| ||| |||||    
T  43490160 gggtgtattgtcacctaagggtgtttatgtatcataactcattatttttt 43490111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 45097799 - 45097838
Alignment:
Q  70 tgtattgccacctaatggtgtttatgtatcataactcttt 109  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  45097799 tgtattgccacctaaggatgtttatgtatcataactcttt 45097838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 10249378 - 10249484
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagattttnnnnnnnnnnnnaaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||| | |||||||||||| ||||||||| || ||||||||||||            ||| ||||||||| ||||||| ||||| ||||||||||    
T  10249378 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcat 10249477  T
Q  102 aactctt 108  Q
     ||||||    
T  10249478 tactctt 10249484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 109
Target Start/End: Original strand, 26891565 - 26891607
Alignment:
Q  67 gggtgtattgccacctaatggtgtttatgtatcataactcttt 109  Q
    |||||||||||||||||| ||||  ||||||||||||||||||    
T  26891565 gggtgtattgccacctaagggtggctatgtatcataactcttt 26891607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 40613960 - 40614002
Alignment:
Q  64 aaagggtgtattgccacctaatggtgtttatgtatcataactc 106  Q
    ||||||||||||||||||||| | ||| |||||||||||||||    
T  40613960 aaagggtgtattgccacctaaggatgtctatgtatcataactc 40614002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 13438447 - 13438398
Alignment:
Q  2 aaagagaaaatatgcttgtgcgggatccacgtgattatgtgtcagatttt 51  Q
    ||||||||| | |||||||||||| ||||||||| || ||||||||||||    
T  13438447 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttt 13438398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 101
Target Start/End: Original strand, 19930878 - 19930915
Alignment:
Q  64 aaagggtgtattgccacctaatggtgtttatgtatcat 101  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  19930878 aaagggtgtattgccacctaagggtgtctatgtatcat 19930915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 10167 - 10212
Alignment:
Q  64 aaagggtgtattgccacctaatggtgtttatgtatcataactcttt 109  Q
    ||||| ||||||||||||||| ||||| ||||||||||||||||||    
T  10167 aaaggatgtattgccacctaaaggtgtctatgtatcataactcttt 10212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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