View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14438_high_13 (Length: 415)
Name: NF14438_high_13
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14438_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 16 - 405
Target Start/End: Original strand, 47501201 - 47501590
Alignment:
| Q |
16 |
aggggacaacgcatggcagttaacagcagcaacaatggttgggcttcaaagcattcccgggcttgtcatactttacggaagcctagtgaagaaaacatgg |
115 |
Q |
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| T |
47501201 |
aggggacaacgcatggcaattaacagcagcaacaatggttgggcttcaaagcattcccgggcttgtcatactttacggaagcctagtgaagaaaacatgg |
47501300 |
T |
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| Q |
116 |
gctataaactcagctttcatggccttctatgcatttgcatccgttctcctttgttgggtttcatgggcataccaaatgtcatttggggagaaaatggtat |
215 |
Q |
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| T |
47501301 |
gctataaactcagctttcatggccttctatgcatttgcatccgttctcctttgttgggtttcatgggcataccaaatgtcatttggggagaaaatggtat |
47501400 |
T |
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| Q |
216 |
ttttcttagggaaaccaaatgtagcattagatgaaaagtttttgttggggaaagcatttttggggaattttcctaatgctacaatggtattttatcaagg |
315 |
Q |
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| T |
47501401 |
ttttcttagggaaaccaaatgtagcattagatgaaaagtttttgttggggaaagcatttttggggaattttcctaatgctacaatggtattttatcaagg |
47501500 |
T |
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| Q |
316 |
tgttttcgctggtcttactttgattgtgatagctggtgctttacttgggagaatgaacactcgtgcatggatgttgtttgtgccactttg |
405 |
Q |
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| T |
47501501 |
tgttttcgctggtcttactttgattttgatagctggtgctttacttgggagaatgaacattcgtgcatggatgttgtttgtgccactttg |
47501590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 183
Target Start/End: Original strand, 31605709 - 31605872
Alignment:
| Q |
20 |
gacaacgcatggcagttaacagcagcaacaatggttgggcttcaaagcattcccgggcttgtcatactttacggaagcctagtgaagaaaacatgggcta |
119 |
Q |
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| T |
31605709 |
gacaatgcatggcaactaacagcagcaacattagtaggccttcaaactgttcctgggcttgtaatactctatggcagcatggttaagaaaaaatgggccg |
31605808 |
T |
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| Q |
120 |
taaactcagctttcatggccttctatgcatttgcatccgttctcctttgttgggtttcatgggc |
183 |
Q |
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| T |
31605809 |
taaattcggctttcatggccctatatgcatttgctgctgtactagtttgttgggttttatgggc |
31605872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 373
Target Start/End: Complemental strand, 13350111 - 13350022
Alignment:
| Q |
284 |
tttcctaatgctacaatggtattttatcaaggtgttttcgctggtcttactttgattgtgatagctggtgctttacttgggagaatgaac |
373 |
Q |
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| T |
13350111 |
tttccaaatgctactatgatttattttcaatgtgtttttgctgctattactttgattttgatagctggtgctgtgttggggagaatgaac |
13350022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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